Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G11
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    42   1e-04
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    42   1e-04
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    34   0.030
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    34   0.040
Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical pr...    32   0.12 
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    32   0.12 
DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin p...    32   0.12 
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    31   0.28 
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AF016665-6|AAL02468.1|  655|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z34799-4|CAD44130.2|  691|Caenorhabditis elegans Hypothetical pr...    27   4.5  

>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = +1

Query: 97  EDDGSDDLTPDQLCEGRPADEYFRLSTEGDCRDVVRCTRSGLKQITCPSGLAFDLDKQTC 276
           E  GS + T + +CE      Y   S+ G       CT +  + ++CP+ L +D D Q C
Sbjct: 125 EGSGSGEETVENVCENLEDGAY---SSGGCTTYYFFCTTNTARFLSCPTPLFYDADSQKC 181

Query: 277 DWKGKVNNC 303
            WK  V  C
Sbjct: 182 IWKSLVEEC 190



 Score = 33.5 bits (73), Expect = 0.052
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 103 DGSDDLTPDQLCEGRPADEYFRLSTEGDCR-DVVRCTRSGLKQITCPSGLAFDLDKQTCD 279
           +GS +L P   CEG+ AD    +   G C  + + C+    + + CP+ L F+     CD
Sbjct: 238 EGSGELEPT--CEGK-ADG---IHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCD 291

Query: 280 WKGKVNNCDKLEKPR 324
           W   V  C  L  P+
Sbjct: 292 WPRDVAECAGLPTPQ 306



 Score = 33.5 bits (73), Expect = 0.052
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +1

Query: 121 TPDQLCEGRPADEYFRLSTEGDCRD-VVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVN 297
           TP   CE    D YF     G C      CT      + CP+GL F      CD++  V+
Sbjct: 304 TPQPTCE---EDGYFSF---GQCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVS 357

Query: 298 NCDK 309
            C +
Sbjct: 358 ECQE 361



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 181 GDCRDVVRCTRSGLKQIT-CPSGLAFDLDKQTCDWKGKVNNCD 306
           G+C         G+ +I  CP+ L ++     CDW+  V  C+
Sbjct: 35  GECEPQFLTCSGGIARIMDCPADLIYNEPLLICDWRHNVIGCE 77


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = +1

Query: 97  EDDGSDDLTPDQLCEGRPADEYFRLSTEGDCRDVVRCTRSGLKQITCPSGLAFDLDKQTC 276
           E  GS + T + +CE      Y   S+ G       CT +  + ++CP+ L +D D Q C
Sbjct: 125 EGSGSGEETVENVCENLEDGAY---SSGGCTTYYFFCTTNTARFLSCPTPLFYDADSQKC 181

Query: 277 DWKGKVNNC 303
            WK  V  C
Sbjct: 182 IWKSLVEEC 190



 Score = 33.5 bits (73), Expect = 0.052
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 103 DGSDDLTPDQLCEGRPADEYFRLSTEGDCR-DVVRCTRSGLKQITCPSGLAFDLDKQTCD 279
           +GS +L P   CEG+ AD    +   G C  + + C+    + + CP+ L F+     CD
Sbjct: 238 EGSGELEPT--CEGK-ADG---IHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCD 291

Query: 280 WKGKVNNCDKLEKPR 324
           W   V  C  L  P+
Sbjct: 292 WPRDVAECAGLPTPQ 306



 Score = 33.5 bits (73), Expect = 0.052
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +1

Query: 121 TPDQLCEGRPADEYFRLSTEGDCRD-VVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVN 297
           TP   CE    D YF     G C      CT      + CP+GL F      CD++  V+
Sbjct: 304 TPQPTCE---EDGYFSF---GQCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVS 357

Query: 298 NCDK 309
            C +
Sbjct: 358 ECQE 361



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 181 GDCRDVVRCTRSGLKQIT-CPSGLAFDLDKQTCDWKGKVNNCD 306
           G+C         G+ +I  CP+ L ++     CDW+  V  C+
Sbjct: 35  GECEPQFLTCSGGIARIMDCPADLIYNEPLLICDWRHNVIGCE 77


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 34.3 bits (75), Expect = 0.030
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 103 DGSDDLTPDQLCEGRPADEYFRLSTEGDCRD-VVRCTRSGLKQITCPSGLAFDLDKQTCD 279
           D S + + D+L E         + + G C    + C     + ++C + L +D   + C 
Sbjct: 104 DSSGESSGDELLENVCESLKDGVYSSGTCSSSYIICNSGSPRFLSCSTPLIYDPTNKKCS 163

Query: 280 WKGKVNNCDKL 312
           WKG ++ C ++
Sbjct: 164 WKGMIDECSQV 174



 Score = 33.9 bits (74), Expect = 0.040
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 175 TEGDCRDVV-RCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNC-DKLEKPR 324
           ++ +C +V   C+     +  CP+ L F+    +CDW   V +C +K EKP+
Sbjct: 186 SKSECSNVFFSCSEGIAHRRNCPANLVFNPAISSCDWPKNVMDCSEKSEKPQ 237



 Score = 32.3 bits (70), Expect = 0.12
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 154 DEYFRLSTEGDCRDVVRCTRSGLKQIT-CPSGLAFDLDKQTCDWKGKVNNCD 306
           D YF     G C        +G+  +  CP GL F    Q CD++  V+ CD
Sbjct: 243 DGYFSF---GRCSSSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNVDECD 291



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 205 CTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNC 303
           C     + + CP  L +  + + CDW+  V  C
Sbjct: 45  CVSGEARYMDCPEDLVYHKNLEFCDWRHNVFEC 77


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 33.9 bits (74), Expect = 0.040
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 169  LSTEGDCRDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNC 303
            ++   +C    RC       +TCPSG  F+     CDW   V +C
Sbjct: 1252 IADANNCEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWPSAVPSC 1296



 Score = 33.1 bits (72), Expect = 0.069
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 136  CEGRPADEYFRLSTEGDCRDVVRCTRSGL-KQITCPSGLAFDLDKQTCDWKGKVNNCD 306
            C+G+  D  +R   E DC  +++C    L +  +C S LAF+     CD+  KV+ C+
Sbjct: 1182 CDGKE-DGLYR--NERDCSAILQCFGGELFEHPSCQSSLAFNQLTGKCDYPQKVSGCE 1236



 Score = 30.7 bits (66), Expect = 0.37
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 187 CRDVV-RCTRSGLKQITCPSGLAFDLDKQTCDWK 285
           C DV   C+ + + Q  CP G  F++++Q+CD++
Sbjct: 205 CNDVFYSCSNNMVFQRYCPPGTVFNINQQSCDFQ 238


>Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical
           protein C07G2.1a protein.
          Length = 584

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 136 CEGRPADEYFRLSTEGDCRD-VVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNC 303
           C G+ AD ++     G+C D    C+   L  + CP+ LAFD  +  CD+   V  C
Sbjct: 214 CVGK-ADGFYSF---GECSDHYTACSNGYLIPMQCPARLAFDEARVICDYVMNVPEC 266


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 184 DCRDVVRCTRSGLKQITCPSGLAFDLDKQTCD 279
           DC   +RC         CP+GL+F  D   CD
Sbjct: 577 DCLKFIRCVNGISYNFECPNGLSFHADTMMCD 608


>DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin
           proteoglycan-1 protein.
          Length = 584

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 136 CEGRPADEYFRLSTEGDCRD-VVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNC 303
           C G+ AD ++     G+C D    C+   L  + CP+ LAFD  +  CD+   V  C
Sbjct: 214 CVGK-ADGFYSF---GECSDHYTACSNGYLIPMQCPARLAFDEARVICDYVMNVPEC 266


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 202 RCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNC 303
           +C+   L + TCP  L + LD+  CD+   V +C
Sbjct: 223 QCSNGKLFRKTCPEKLIYVLDQNLCDFPESVKDC 256



 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 184 DCRD-VVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNCDKLEKPRKILP 336
           DC   +++C      +  CPSGL +   +  CD K  V  C + +      P
Sbjct: 700 DCEKYLIKCYNRKTFKFPCPSGLYYSRLQDKCDVKENVEGCPEYKPTTDATP 751



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = +1

Query: 184 DCRDV-VRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNCDKLEKPRKILP 336
           DC D  + C         CP+GL +      CD+K  V +C + +      P
Sbjct: 799 DCEDYYISCNNFETTINRCPAGLFYSKLNNRCDYKEHVEDCPEYKPTPSTTP 850



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 181 GDCRDVVR-CTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNC 303
           G C+ V   C    +   TCP+ L F+     CD+   V +C
Sbjct: 585 GLCKSVFYICANGQVVATTCPANLIFNPYVGECDYSTNVRDC 626


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 130 QLCEGRPADEYFRLSTEGDCRDVVRCTRSGLKQITCPSG 246
           +LCE   A EY    T    + +V  TR   +Q  CP+G
Sbjct: 102 ELCESANATEYNFCPTASAMQFLVEETREAPRQCACPNG 140


>AF016665-6|AAL02468.1|  655|Caenorhabditis elegans Hypothetical
           protein C49D10.10 protein.
          Length = 655

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -2

Query: 263 SRSNASPDGQVICLRPD---LVHLTTSLQSPSV 174
           S S+ASP  + +CL P+   LVH   + Q PSV
Sbjct: 50  STSSASPKPKPMCLTPECITLVHQLLNFQDPSV 82


>Z34799-4|CAD44130.2|  691|Caenorhabditis elegans Hypothetical
           protein F34D10.7 protein.
          Length = 691

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 136 CEGRPADEYFRLSTEGDCRDVVRCTRSGLKQI 231
           C GRPA  Y + + E D   +   TR+ LKQ+
Sbjct: 363 CNGRPAKYYLKHTGEIDLSAMRLDTRAALKQV 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,529,605
Number of Sequences: 27780
Number of extensions: 136667
Number of successful extensions: 435
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)