Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G09
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    28   0.45 
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   2.4  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   5.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   5.5  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    24   7.3  

>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 28.3 bits (60), Expect = 0.45
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 228 PAASFPN*HLPPCWLRHRKASSNIND*NCST 320
           P  SFP   LP CW  H+     +ND N +T
Sbjct: 17  PKCSFPYCSLP-CWKIHQSQCETVNDNNTTT 46


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 115  TINHSTPDHVYSKCSKETHRALSATS 38
            +INH   DHV+  C++E  R L   S
Sbjct: 1409 SINHPIADHVFLLCAQECCRILLTDS 1434


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 18/29 (62%), Positives = 19/29 (65%)
 Frame = +2

Query: 56  AMGLLAALAVNVIGGAVIYGTGGLLAPVV 142
           AMGL A LA    GGA+I  TGGL AP V
Sbjct: 174 AMGL-AGLA----GGALIGLTGGLAAPFV 197


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 262  HVGSDTVKPVQILMIEIVVRNATIMQS 342
            HV   T +  ++L +EIV++NATI  S
Sbjct: 2328 HVRLMTSEGEKLLRLEIVIKNATIFIS 2354


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 312 NFNH*YLNWLYGVGANMAADVSW 244
           N N  Y  WLY + ANM +  SW
Sbjct: 566 NLNPPYSYWLYYMYANMTSLNSW 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,564
Number of Sequences: 5004
Number of extensions: 24432
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)