Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G09
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174... 29 1.8
08_01_0366 + 3236615-3236917 29 1.8
01_01_0658 - 5017219-5018066,5018572-5019085 29 1.8
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777 28 2.3
09_04_0348 - 16890842-16890925,16890942-16891019,16891079-168912... 27 4.1
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627... 27 4.1
09_06_0323 - 22337217-22337450,22338263-22339204 27 7.1
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 27 7.1
08_02_0220 + 14418092-14418538 27 7.1
07_01_0775 + 5976883-5978109 27 7.1
12_02_0114 - 13805646-13805665,13806062-13806194,13806633-138069... 26 9.4
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865... 26 9.4
10_07_0062 - 12499872-12501350 26 9.4
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410... 26 9.4
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907 26 9.4
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 26 9.4
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438... 26 9.4
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921... 26 9.4
>09_01_0112 +
1737438-1737777,1738441-1738511,1738974-1739052,
1741559-1741641,1741733-1741784,1742038-1742105,
1742279-1742345,1742426-1742505,1742576-1742640,
1742785-1742847,1743271-1743427,1743511-1743588,
1743677-1744219,1744321-1744497,1744534-1744788,
1745270-1745329,1745874-1745888,1746123-1746135,
1746819-1746934
Length = 793
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 200 QQQLCCQPLYLHYRSQALGQRQAPISRRYHKSQHPRSRLQQVQQG 66
QQQ L H + A+ Q Q+P + H + P ++ Q QQG
Sbjct: 673 QQQQKLLLLQQHQQKLAMQQLQSPPQAQTHPAMQPVQQIPQAQQG 717
>08_01_0366 + 3236615-3236917
Length = 100
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 196 CCPGILRQRRCRQRHFPTD 252
CCP R RRCR+RH D
Sbjct: 30 CCPMRRRHRRCRRRHDDDD 48
>01_01_0658 - 5017219-5018066,5018572-5019085
Length = 453
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 247 LGNDAAGNDVAVICLGSNSCAASRYTCT 164
LG A G D+A CL S + A+ Y C+
Sbjct: 21 LGRVADGADIAAYCLASRAFLAASYACS 48
>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
Length = 778
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 175 SGWQHSCCCPGILRQRRCRQRHFPTDICRHVGSDTVKPVQILMIEI 312
SG + SCC G+LR R C + H C + P++ +E+
Sbjct: 66 SGGEPSCCAHGLLR-RACVRAHPAVAACAPAAAAASHPLRCRALEL 110
>09_04_0348 -
16890842-16890925,16890942-16891019,16891079-16891266,
16891414-16891537
Length = 157
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 287 GFTVSEPTWRQMSVGK*RCRQRRCRNMPGQQQLC 186
G+T+ EP Q++ K C Q C M +LC
Sbjct: 69 GYTLVEPAREQLNQNKRSCMQDGCSYMGSYGELC 102
>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
6272359-6272511,6273381-6273586,6274280-6274733,
6276573-6276610,6276923-6277046,6277184-6277246,
6277350-6277412,6277526-6278152,6278267-6278294,
6278373-6278413,6278689-6278851,6278987-6279039,
6279217-6279262,6279373-6279444,6279578-6279741,
6279968-6280099,6280249-6280565,6280721-6280892,
6281009-6281107,6281275-6281349,6281446-6281504,
6281647-6281836,6281982-6282020
Length = 1255
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 226 NDVAVICLGSNSCAASRYTCTTEAKHWANDRRQ 128
N V+CLGSN+C+ + +++H N Q
Sbjct: 940 NSPDVVCLGSNTCSNKTKNMSIKSEHIYNKSNQ 972
>09_06_0323 - 22337217-22337450,22338263-22339204
Length = 391
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 265 HGGRCQLGNDAAGNDVAVICLG 200
H RC+ D A ++VAV+C G
Sbjct: 209 HSTRCRFRADGAEHEVAVVCRG 230
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 244 GNDAAGNDVAVICLGSNSCAASRYTCTTEAKHW 146
GND D AV+ LG C ASRY + W
Sbjct: 23 GNDLHNGDAAVV-LGKTWCWASRYPGDQYDRFW 54
>08_02_0220 + 14418092-14418538
Length = 148
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 205 LGSNSCAASRYTCTTEAKHWANDRRQ 128
L S CAA CT A W +D R+
Sbjct: 87 LASVQCAAEAVECTAAAAEWDDDARR 112
>07_01_0775 + 5976883-5978109
Length = 408
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +1
Query: 148 NAWLR*CRY-SGWQHSCCC 201
+AW+ CRY G H CCC
Sbjct: 278 DAWVGICRYGEGTGHLCCC 296
>12_02_0114 -
13805646-13805665,13806062-13806194,13806633-13806975,
13807375-13807583,13807995-13808243
Length = 317
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 175 SGWQHSCCCPGILRQRRCRQR-HFPTDICRHVGSDTVKPVQILMI 306
SG SC PG +R+C+ PT H+ + +K L++
Sbjct: 125 SGCSSSCYYPGAYNERKCQSNCGMPTQNWYHIPREWLKESDNLLV 169
>10_07_0124 -
13085820-13085997,13086235-13086362,13086475-13086550,
13086726-13086803,13086985-13087064,13087411-13087480,
13087730-13087887,13088225-13088315,13088379-13088455,
13088612-13088686,13088798-13089071,13089911-13090041,
13090154-13090323,13090413-13090971,13091077-13091127
Length = 731
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 92 SRLQQVQQGDPSRFISYFLKNNHKKLKC 9
S LQ G+P R + L +HK LKC
Sbjct: 626 SILQSALIGNPRRMVQLDLVKSHKHLKC 653
>10_07_0062 - 12499872-12501350
Length = 492
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 175 SGWQHSCCCPGILRQRRCRQRHFPTDICRHVGSDTVKPVQI 297
+ W+ P LR RQR P R GSD V + +
Sbjct: 171 TAWRRLTSDPAFLRAHHHRQRDLPLIYFRRGGSDRVGAIDL 211
>09_04_0075 -
14340458-14340551,14340643-14340814,14340895-14341066,
14341617-14341811,14341886-14342053,14342150-14342335,
14342797-14342881,14342896-14343206,14344222-14344569
Length = 576
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 89 RLQQVQQGDPSRFISYFLKNNHKKLK 12
R Q Q DP F+S+ L H KLK
Sbjct: 327 RFQIGVQSDPVEFMSWLLNTMHSKLK 352
>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
Length = 794
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 86 LQQVQQGDPSRFISYFLKNNHKKLKCPR 3
L V++ D SRFI F+++NH+ L C R
Sbjct: 258 LAYVRKSD-SRFIGAFMQDNHELLCCLR 284
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 277 CRSQHGGRCQLGNDAAGNDVAVICLGSN 194
CR++ +C LG +A ++ VI LGSN
Sbjct: 745 CRARSFTQCSLGGGSADQEI-VIALGSN 771
>06_03_1298 +
29141578-29141623,29142129-29142250,29143818-29143874,
29143983-29144138,29144220-29144304,29144575-29144665,
29144807-29144971,29145064-29145186,29145334-29145409,
29145513-29145642,29145951-29147824,29148339-29148529,
29148697-29148860,29149164-29149275,29149276-29149294
Length = 1136
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -3
Query: 230 RQRRCRNMPGQQQLCCQPLYLHYRSQALGQRQAPISRRYHKSQHPRSRLQQVQQ 69
+Q+ + GQQ QPL L + Q Q+Q ++ + Q + LQQ QQ
Sbjct: 520 QQQHASSTQGQQPATSQPLLLPQQQQQQQQQQ----QQQQQQQQQQKLLQQQQQ 569
>02_05_1142 -
34391144-34391590,34391715-34391904,34392058-34392128,
34392403-34392515,34392656-34392749,34392843-34392908,
34393120-34393282,34393441-34393547,34393918-34394115,
34394204-34394329,34394800-34394904,34395056-34395098,
34395334-34395391,34395479-34395659,34395751-34395917,
34396010-34396249,34396341-34396781,34397147-34397272,
34397457-34397561,34397935-34398002,34398169-34398272,
34398856-34399008,34399472-34399570,34399919-34400046,
34400149-34400300,34400423-34400502
Length = 1274
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 176 LYLHYRSQALGQRQAPISRRYHKSQHPRSRLQQVQQ 69
LY+ Y A+ Q+ R+ Q P+ +LQQ QQ
Sbjct: 502 LYIGYSKHAIEQQFLKGKRQPQHQQTPKPKLQQQQQ 537
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,582,062
Number of Sequences: 37544
Number of extensions: 184733
Number of successful extensions: 534
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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