Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G09
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024765-1|AAF60529.2|  300|Caenorhabditis elegans Prion-like-(q...    28   2.7  
Z46935-2|CAA87052.1|  792|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.      27   6.3  

>AC024765-1|AAF60529.2|  300|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 82
           protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = -3

Query: 230 RQRRCRNMPGQQQLCCQPLYLHYRSQALG--QRQAPISRRYHK--SQHPRSRLQQVQQ 69
           RQ+  + MP +++     +    ++Q     Q+Q  +++++H+   QH +S LQQVQQ
Sbjct: 136 RQQMQQPMPSRRRSAAHQVRQRIQAQNTVRLQQQEQLAQQHHQHQQQHAQSELQQVQQ 193


>Z46935-2|CAA87052.1|  792|Caenorhabditis elegans Hypothetical
           protein M106.4a protein.
          Length = 792

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 18/82 (21%), Positives = 37/82 (45%)
 Frame = -3

Query: 260 RQMSVGK*RCRQRRCRNMPGQQQLCCQPLYLHYRSQALGQRQAPISRRYHKSQHPRSRLQ 81
           +++ +G  R  +R CRN+P + Q   +   +   S+   +R + +      SQH  ++  
Sbjct: 13  KRVKIGA-RQSKRHCRNLPSELQRAKRTKAVSKVSEHTMKRSSSMLDINEDSQHSTNKAP 71

Query: 80  QVQQGDPSRFISYFLKNNHKKL 15
             ++    RF S  +  +H  L
Sbjct: 72  PPKKAPEDRFDSANMNGSHVTL 93


>Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical
           protein D2045.1b protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 131 PISRRYHKSQHPRSRLQQVQQGDPS 57
           P+   YH  Q P   +   QQG P+
Sbjct: 188 PVQNEYHPQQQPHPAMMAPQQGPPA 212


>Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical
           protein D2045.1a protein.
          Length = 959

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 131 PISRRYHKSQHPRSRLQQVQQGDPS 57
           P+   YH  Q P   +   QQG P+
Sbjct: 513 PVQNEYHPQQQPHPAMMAPQQGPPA 537


>AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.
          Length = 959

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 131 PISRRYHKSQHPRSRLQQVQQGDPS 57
           P+   YH  Q P   +   QQG P+
Sbjct: 513 PVQNEYHPQQQPHPAMMAPQQGPPA 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,998,531
Number of Sequences: 27780
Number of extensions: 152707
Number of successful extensions: 425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)