Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G08
(240 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 0.76
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c... 25 1.0
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 25 1.0
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 1.3
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 25 1.3
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 25 1.8
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 24 3.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 23 4.1
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 23 4.1
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 23 5.4
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 23 5.4
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 23 5.4
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 23 5.4
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 23 7.1
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 23 7.1
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 23 7.1
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 22 9.4
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 22 9.4
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 22 9.4
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 22 9.4
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 22 9.4
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 22 9.4
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 0.76
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 159 GKPCPRFTAGLYSAANWIYSTHTLFS 82
GK C + G++ A+W+YS H LFS
Sbjct: 280 GKICD-YLFGIF-VASWVYSRHYLFS 303
>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 124 FSC*LDILYPHTLFTGSIPF 65
FSC L+ L P+TL S+P+
Sbjct: 120 FSCELETLRPYTLMRKSLPY 139
>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
translocase complex subunit Tim23|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 240 VYWLSRGLSPTAISASAFVTCSGAW 166
+Y +RGL AIS+S T +G W
Sbjct: 174 LYKSTRGLRAMAISSSLVATAAGIW 198
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 1.3
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Frame = -2
Query: 176 PEHGSPENLV---RDSPLVCIQ 120
PEHG PENL+ +P VCI+
Sbjct: 238 PEHGRPENLLWRYVPAPPVCIR 259
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 1.3
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 232 VKQRVITHCNICKCLRDMFRSMVVRKTLSEIHRW-FVFSC 116
+++R HC + C + RS ++K +S IH F C
Sbjct: 230 LEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHC 269
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 24.6 bits (51), Expect = 1.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 211 HCNICKCLRDMFRSMVVRK 155
HC++CK L++ + M ++K
Sbjct: 290 HCDVCKSLQEAEKRMKIKK 308
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 170 APEHVTKALADIAVGDNPLL 229
AP+ + KAL+ +A+ +NP L
Sbjct: 217 APQDIAKALSFLALNNNPKL 236
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 136 GESRTRFSGLPCSGTCHEGTCRYCS 210
G++R + PC CH G C C+
Sbjct: 283 GKTRGQDCEHPCPLLCHPGPCPPCT 307
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 160 GLPCSGTCHEGTCRYCS 210
G C CH G+C CS
Sbjct: 486 GHRCKYKCHLGSCGTCS 502
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 141 ISDKVFRTTMLRNMSRRHLQILQWVIT 221
+ D+V R LRN R+ +L W+ T
Sbjct: 681 LKDRVDRELTLRNEFRKRHPLLTWIPT 707
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 23.0 bits (47), Expect = 5.4
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +2
Query: 86 KSVWVEYIQLAAEYKPA---VNLGQGFPDYHAPEHVTKALADIAVGDNPLLNQY 238
KS+ + + +YK V + Q PD H KAL ++ GD ++ Y
Sbjct: 75 KSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGIMFGY 128
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 182 VTKALADIAVGDN 220
+TK ADIAVG N
Sbjct: 1226 ITKTFADIAVGSN 1238
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 152 LVRDSPLVCIQLLIGYTLPTHSFHRVHTVSVVRIY 48
LV S +V +LL Y L + R+H +S+ ++Y
Sbjct: 284 LVSQSTVVPKRLLKVYPLIEQTAKRLHRISLSKVY 318
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 170 HGSPENLVRDSPLVCIQ 120
HG PE+ + P +C+Q
Sbjct: 210 HGQPESTMSRKPKLCVQ 226
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 199 CKCLRDMFRSMVVRKTLSEIHRWFV 125
CK +RD S+ V + L E+H + +
Sbjct: 144 CKTIRDPKLSIYVGRRLCELHNFIL 168
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 22.6 bits (46), Expect = 7.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 11 TRRNLSSIGTMSDKFGLPKRYGPGEKSVWVEYIQL 115
T SS M FG KRY +K EY +L
Sbjct: 33 TNEESSSQDNMKASFGSSKRYDERQKKKRSEYRRL 67
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 65 KRYGPGEKSVWVEYIQLAAEYKPA 136
+RYGP EK + +Y AA Y P+
Sbjct: 118 RRYGPDEKELEKQY--PAAGYSPS 139
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 80 GEKSVWVEYIQLAAEYKPAVNL 145
G+ ++W++YI A + K AVN+
Sbjct: 105 GDVTLWLDYIHYAQKIK-AVNI 125
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 22.2 bits (45), Expect = 9.4
Identities = 16/66 (24%), Positives = 25/66 (37%)
Frame = -1
Query: 231 LSRGLSPTAISASAFVTCSGAW*SGKPCPRFTAGLYSAANWIYSTHTLFSPGPYRFGSPN 52
LS+ + A A + + S S P P+ SA+ +P +P
Sbjct: 314 LSKSSTSIATVAPSLASVSSVTKSPSPTPQSAPRAQSASTETAQDLDFLTPPRLSVNNPF 373
Query: 51 LSDMVP 34
LSD+ P
Sbjct: 374 LSDLYP 379
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 59 LPKRYGPGEKSVWVEYI 109
+PK GP ++S WV+ I
Sbjct: 183 IPKLLGPLKQSTWVKLI 199
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 22.2 bits (45), Expect = 9.4
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = -1
Query: 234 WLSRGLSPTAISASAF-------VTCSGAW*SGKPCPRFTAGLYSAANWIYSTHT 91
WL+ G + +ISA+AF + C A +P PR + W+++T T
Sbjct: 122 WLTMGTALCSISANAFNQSMEPMLDCQMARTRSRPIPR--GAIRPEYAWLFATLT 174
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 209 LQYLQVPS*HVPEHGSP 159
L+YL+VP + EH SP
Sbjct: 1027 LKYLKVPQGPINEHKSP 1043
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 126 YSAANWIYSTHTLFSPGPYRFGSPNLSDMVP 34
Y+ WI+ + T+FS + P L++ P
Sbjct: 197 YTTYKWIFWSTTIFSGFIFALSLPLLAETYP 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,164,797
Number of Sequences: 5004
Number of extensions: 22825
Number of successful extensions: 60
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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