Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G08
(240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977... 38 9e-04
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591 34 0.018
09_04_0101 + 14611622-14613133 27 2.1
08_01_0145 + 1142675-1144042 27 2.8
03_05_0991 + 29522483-29522614,29523091-29523159,29523369-295234... 26 3.7
02_05_0084 - 25690346-25691206 26 3.7
02_03_0095 + 15144538-15145596 26 3.7
08_02_0233 + 14593639-14594468,14594480-14594986,14595362-145958... 25 8.5
07_03_0906 + 22481456-22481802,22482105-22482186,22482299-224824... 25 8.5
05_01_0265 + 2037518-2037608,2038101-2038348,2038425-2038551,203... 25 8.5
03_06_0488 - 34281623-34283431 25 8.5
>10_08_0422 -
17796916-17797167,17797328-17797453,17797546-17797700,
17797793-17797907,17798022-17798118,17798274-17798368,
17798500-17798585,17798689-17798819,17798909-17799090
Length = 412
Score = 38.3 bits (85), Expect = 9e-04
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 98 VEYIQLAAEYKPAVNLGQGFPDYHAPEHVTKALADIAVGDNPLLNQY 238
++ + A+ AVNL +GFPD+ AP HV A A D LNQY
Sbjct: 17 IQQLSHLAQRAGAVNLAEGFPDFPAPAHVKAAAAAAIAAD---LNQY 60
>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
Length = 455
Score = 33.9 bits (74), Expect = 0.018
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 38 TMSDKFGLPKRYGPGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPEHVTK-ALADIAVG 214
T+ + KR + +++ + LA ++ A+NLGQGFP++ P+ V + A+ I G
Sbjct: 66 TLGPGVTVAKRLEKFKTTIFTQMSMLAIKHG-AINLGQGFPNFDGPDFVKEAAIQAINAG 124
Query: 215 DNPLLNQY 238
N Y
Sbjct: 125 KNQYARGY 132
>09_04_0101 + 14611622-14613133
Length = 503
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 158 PDYHAPEHVTKALADIAVGDNPLL 229
PD H HV KALA +A G P++
Sbjct: 102 PDAHTLPHVLKALARLAPGSLPVV 125
>08_01_0145 + 1142675-1144042
Length = 455
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 147 PRFTAGLYSAANWIYSTHTLFSPGPYRFGSPNLSDMVPIEL 25
PR G+ + Y T + GPY G P+L M ++L
Sbjct: 46 PRGLIGIGGSNEQRYIVPTFVAIGPYHHGKPHLHKMEEVKL 86
>03_05_0991 +
29522483-29522614,29523091-29523159,29523369-29523410,
29524409-29524540,29524832-29525023,29525134-29525166
Length = 199
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 159 GKPCPRFTAGLYSAANWIYS 100
GKPC R A + + +W+YS
Sbjct: 61 GKPCARQVAQVRRSVDWVYS 80
>02_05_0084 - 25690346-25691206
Length = 286
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 234 WLSRGLSPTAISASAFVT 181
W+SRG SP +ASA+ T
Sbjct: 231 WVSRGQSPATAAASAYYT 248
>02_03_0095 + 15144538-15145596
Length = 352
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 123 SAANWIYSTHTLFSPGPYRFGSPNLSDMVPIELRFLLVP 7
SAA W + + R G+P L+ ++P+ F +VP
Sbjct: 17 SAAVWAAMFYARLAAASLRPGAPRLAALLPVVALFCVVP 55
>08_02_0233 +
14593639-14594468,14594480-14594986,14595362-14595856,
14596592-14596662,14597116-14597199,14597328-14597446,
14598029-14598109,14598397-14598411
Length = 733
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +2
Query: 59 LPKRYGPGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPEHVTKALADIAVGDNP 223
L +R+ P + + PA G FP++ V ALA +A ++P
Sbjct: 35 LSRRWRPLWRQAGTVNLDTEPYLDPAAYRGNNFPEHRRSAFVDHALAALAACESP 89
>07_03_0906 +
22481456-22481802,22482105-22482186,22482299-22482400,
22483005-22483315,22483948-22484044,22484522-22484696,
22485074-22485150,22485632-22486027,22486254-22486303,
22487315-22487382,22488142-22488701
Length = 754
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 229 KQRVITHCNICKCLRDMFRSMVVRK 155
K + CN+C +R FR++++R+
Sbjct: 634 KHKQTCTCNVCMTVRRRFRTLMMRR 658
>05_01_0265 +
2037518-2037608,2038101-2038348,2038425-2038551,
2038671-2038944,2038984-2039025,2039026-2039158,
2039256-2039342,2039631-2039762
Length = 377
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -1
Query: 138 TAGLYSAANWIYSTHTLFSPGPYRFGSPNLSDMVPIELRFLLVP 7
T+ +YS Y+ H+L YR P P++++ + VP
Sbjct: 13 TSFIYSTYVMFYAFHSLQGSDAYRTADPTPRGPQPVKVQPIAVP 56
>03_06_0488 - 34281623-34283431
Length = 602
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 223 RVITHCNIC-KCLRDMFRSMVVRKTLSEIHRWFVFSC 116
RV + C+ KC+ ++R +V + S HR+ SC
Sbjct: 560 RVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSC 596
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,572,791
Number of Sequences: 37544
Number of extensions: 154228
Number of successful extensions: 371
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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