Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G08
         (240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031621-5|CAA20930.1|  437|Caenorhabditis elegans Hypothetical ...    52   5e-08
Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical pr...    49   4e-07
Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical pr...    49   4e-07
U56963-10|AAM97949.1|  353|Caenorhabditis elegans Temporarily as...    27   2.3  
U56963-9|AAB38126.2|  404|Caenorhabditis elegans Temporarily ass...    27   2.3  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    26   4.1  
AC024761-4|AAF59466.2|  332|Caenorhabditis elegans Hypothetical ...    26   4.1  
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    25   5.4  
AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine re...    25   7.2  
Z81127-4|CAB03389.1|  344|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    25   9.5  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U00047-8|AAP68924.1|  510|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U00047-7|AAA50693.2|  557|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AL031621-5|CAA20930.1|  437|Caenorhabditis elegans Hypothetical
           protein F28H6.3 protein.
          Length = 437

 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 26/45 (57%), Positives = 34/45 (75%)
 Frame = +2

Query: 74  GPGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPEHVTKALADIA 208
           G  ++S+WVE+ +LA E K AV+LGQGFPD  AP+ VT+ L DIA
Sbjct: 14  GEHQESIWVEFGKLAIENK-AVSLGQGFPDSPAPKFVTEILKDIA 57


>Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical
           protein R03A10.4b protein.
          Length = 424

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = +2

Query: 89  SVWVEYIQLAAEYKPAVNLGQGFPDYHAPEHVTKALADIA 208
           S+WVE+  LAAE K AVNLGQGFPD  AP+ VT  L +++
Sbjct: 19  SIWVEFTTLAAETK-AVNLGQGFPDSPAPKFVTDLLENLS 57


>Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical
           protein R03A10.4a protein.
          Length = 441

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = +2

Query: 89  SVWVEYIQLAAEYKPAVNLGQGFPDYHAPEHVTKALADIA 208
           S+WVE+  LAAE K AVNLGQGFPD  AP+ VT  L +++
Sbjct: 36  SIWVEFTTLAAETK-AVNLGQGFPDSPAPKFVTDLLENLS 74


>U56963-10|AAM97949.1|  353|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 32, isoform b protein.
          Length = 353

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 137 VNLGQGFPDYHAPEHVTKALADIAVGDNPLLNQY 238
           V L Q  P+  A  HV K +AD+  GD  ++  Y
Sbjct: 45  VALEQQSPEIAAGVHVDKDIADVGAGDQGIMFGY 78


>U56963-9|AAB38126.2|  404|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 32, isoform a protein.
          Length = 404

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 137 VNLGQGFPDYHAPEHVTKALADIAVGDNPLLNQY 238
           V L Q  P+  A  HV K +AD+  GD  ++  Y
Sbjct: 96  VALEQQSPEIAAGVHVDKDIADVGAGDQGIMFGY 129


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
           protein Y43D4A.5 protein.
          Length = 1648

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 200 LQVPS*HVPEHGSPENLVRDSPLVCIQLLIGYTLPTHSF 84
           + V S HVP    PE +   +P+     +  + LPT SF
Sbjct: 383 IPVTSAHVPMTSPPEMMTSPAPMTSSTSVPQHILPTSSF 421


>AC024761-4|AAF59466.2|  332|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.6 protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 166 PCSGTCHEGTCRYC 207
           PC+GTC+   C  C
Sbjct: 23  PCTGTCNHSICEQC 36


>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
            protein K02F6.4 protein.
          Length = 1193

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 59   LPKRYGPGEKSVWVEYIQLAAE 124
            LPK +GP +  VW+ Y  + AE
Sbjct: 942  LPK-FGPSDYKVWIHYNDMMAE 962


>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 124 IQTSGESRTRFSGLPCSGTCHEGTCRYCSG 213
           +  +G S   F G  C G C  G C  CSG
Sbjct: 11  VLVAGASAQCFGG-GCGGGCFGGNCGGCSG 39


>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 GFPDYHAPEHVTKALADIAVGD 217
           G PDY   E V KA+  I  GD
Sbjct: 631 GVPDYKMQEDVVKAMETIGNGD 652


>AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine
           receptor, class w protein7 protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 238 ILVKQRVITHCNICKCLRDMFR 173
           +LV    I HC IC C+   +R
Sbjct: 319 LLVMASSIAHCVICYCMSSQYR 340


>Z81127-4|CAB03389.1|  344|Caenorhabditis elegans Hypothetical
           protein T22G5.4 protein.
          Length = 344

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = -3

Query: 220 VITHCNICKC-LRDMFRSMVVRKTLSEIHRWFVFSC 116
           +IT  N C+      FRS   RK   E   W  F C
Sbjct: 256 IITMPNFCQAYFVTYFRSPRFRKAYREHFHWLTFGC 291


>Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical
           protein F36G3.3 protein.
          Length = 141

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 218 YHPLQYLQVPS*HVPEHGSPENLVRDSPLVCIQLLIGYTLPT 93
           YHP  ++  P  H  ++G  EN+V  +  V   L  G  +PT
Sbjct: 21  YHPSSHVTAPPYHYHDNGGFENVVDVNSPVYTTLASG-PMPT 61


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +1

Query: 151 RFSGLPCSGTC-HEGTC 198
           ++SG PCSG C + GTC
Sbjct: 135 QYSGDPCSGYCSNGGTC 151


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 127 QTSGESRTRFSGLPCSGTCHEGTCRYC 207
           +T G +R      PC+  CH G C  C
Sbjct: 320 ETCGGARKFGCPHPCTELCHPGPCIEC 346


>U00047-8|AAP68924.1|  510|Caenorhabditis elegans Hypothetical
           protein ZK418.9b protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 110 QLAAEYKPAVNLGQGFPDYHA 172
           Q +A+  PAVN   G PDY A
Sbjct: 442 QASADPAPAVNPATGAPDYSA 462


>U00047-7|AAA50693.2|  557|Caenorhabditis elegans Hypothetical
           protein ZK418.9a protein.
          Length = 557

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 110 QLAAEYKPAVNLGQGFPDYHA 172
           Q +A+  PAVN   G PDY A
Sbjct: 489 QASADPAPAVNPATGAPDYSA 509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,475,492
Number of Sequences: 27780
Number of extensions: 134446
Number of successful extensions: 344
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)