Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G06
(280 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 27 0.65
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 0.86
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 26 0.86
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 25 1.5
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|... 25 1.5
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 24 3.5
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 24 3.5
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 23 6.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 23 6.1
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 23 6.1
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa... 23 8.0
SPBC119.18 |||mitochondrial distribution and morphology protein ... 23 8.0
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 23 8.0
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 23 8.0
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 23 8.0
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 23 8.0
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 26.6 bits (56), Expect = 0.65
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 106 WKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSVATHI 255
W + I + ADY DP +L N P F+ H+ R+S HI
Sbjct: 544 WIDRNLIRLCQHFADYRKEDPSSFRLLPNFTLYPQFIFHL--RRSPFLHI 591
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 0.86
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 11 TRIMTGVTLMNPVV*QRKRVIISLSRYITAWL 106
T I+ T +V +R+ S SRY++AWL
Sbjct: 621 TNIVALQTYAKSIVSTSRRLYASTSRYVSAWL 652
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 0.86
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 128 RYQSSKLITKSMTRKVINYLQI*QKYLIFSNIFLRGN 238
R +++++I K MTR+ ++Y KY++ N LR N
Sbjct: 3 RAENARIIQKPMTRRTVDYGSGLSKYIV--NRHLRSN 37
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 1.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 4 IRHEDYDRCHFNESSCLTAETSDNFIVTIYNSLAWKV 114
+ HED+ H N T N++++I S W++
Sbjct: 113 MNHEDFRAMHVNGVQNDLVSTFPNYLISILESKNWQL 149
>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 25.4 bits (53), Expect = 1.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 43 SSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVV 141
SS AET I+TI NSL + V FI P +
Sbjct: 7 SSVAIAETRRQIILTIINSLVYLV-NFISCPSI 38
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 24.2 bits (50), Expect = 3.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 159 DFVISFDDWYLNEFLHFPSQA 97
DF +S +D +++FLH+P A
Sbjct: 133 DFSLSREDKEIDDFLHYPLPA 153
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 24.2 bits (50), Expect = 3.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 124 IEIPVVKADYEVYDPKGNKLPSNLAEIP 207
IE V +A ++Y PKG+K+ EIP
Sbjct: 261 IEEKVDEASLDLYTPKGHKIVFPNNEIP 288
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 23.4 bits (48), Expect = 6.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 100 LAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHI 225
L W + I++ A+Y DP +L S P F+ ++
Sbjct: 537 LRWTDRMLIKLCQKFAEYRKDDPSSFRLSSQFTLYPQFMYYL 578
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 262 HTIYVWQQISS*EYV*ENQVFLLDLKVI 179
H + W++++S EY N++ L+ K+I
Sbjct: 3194 HLLSEWEKLASREYSLANEMDLIKKKII 3221
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 23.4 bits (48), Expect = 6.1
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 64 TSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNK 180
TS ++ + SLA + +KF + V Y D G K
Sbjct: 174 TSKAGVIQLIKSLAVEWRKFARVNCVSPGYTTSDMTGGK 212
>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 359
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 79 IVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNL 195
I+T NS + K + I + +VY P + P+NL
Sbjct: 299 IITDSNSRNLEDPKRVRISIAAPGIDVYSPAFDVTPANL 337
>SPBC119.18 |||mitochondrial distribution and morphology protein
Mdm35 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 69
Score = 23.0 bits (47), Expect = 8.0
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -2
Query: 144 FDDWYLNEFL 115
F+DWY N+FL
Sbjct: 20 FNDWYANKFL 29
>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 260 YYICVATDFLVGICLRKSGISARF 189
Y++ + T+ C++ SG+SA F
Sbjct: 21 YFLLIITEIGFSSCIQYSGLSAYF 44
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 214 ENQVFLLDLKVIYYLSGH 161
E+Q+ + LK+I YLS H
Sbjct: 325 ESQIRKISLKIIDYLSSH 342
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 160 YDPKGNKLPSNLAEIPDFLKH 222
YD + + L LA IPD L H
Sbjct: 394 YDSRWDALQDTLASIPDELYH 414
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 163 DPKGNKLPSNLA 198
DPKGNKL N+A
Sbjct: 122 DPKGNKLAINVA 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,141,691
Number of Sequences: 5004
Number of extensions: 21161
Number of successful extensions: 70
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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