Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G06
(280 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 39 5e-04
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 37 0.003
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 29 0.40
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381... 27 2.1
05_06_0249 + 26678486-26679270,26679330-26679891,26679930-266800... 27 2.8
07_03_1187 + 24667044-24667091,24667196-24667274,24667520-246676... 26 3.7
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 26 4.9
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 26 4.9
01_01_0407 - 3067071-3070085 26 4.9
07_03_0741 - 21107566-21107838,21107964-21108102,21108189-211084... 25 6.5
01_06_0727 - 31517592-31518600,31519999-31520225 25 6.5
01_07_0229 + 42161770-42164562 25 8.6
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 39.1 bits (87), Expect = 5e-04
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 73 NFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEI 204
+ +V +YNSL WK + + IPV+ V+D +G ++ S L I
Sbjct: 460 SLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPI 503
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +1
Query: 19 YDRCHF-NESSCLTAE----TSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKL 183
+ +C N S C + E ++ + ++ +YN L W+ F+ +PV A+ V G L
Sbjct: 470 FSQCQLLNISYCPSTEEGISSAKSLVIVVYNPLGWERSDFVRVPVNDANLIVKTSDGTSL 529
Query: 184 PSNLAEI 204
S L E+
Sbjct: 530 ESQLVEV 536
>03_06_0221 +
32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 29.5 bits (63), Expect = 0.40
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 79 IVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTR 234
++ ++ +L + F E P ++ E Y +G K ++IPD+LKH+ TR
Sbjct: 262 LLKMFTALGMYSESF-EKPFLECTSEFYATEGVKYLQQ-SDIPDYLKHVETR 311
>12_01_1073 + 11135853-11137388,11137627-11137846,11137990-11138178,
11138257-11138457,11138547-11139246,11163479-11164106
Length = 1157
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 10 HEDYDRCHFNESSCLTAETSDNFIVTIYNSLAWKVK 117
+E Y++C + S + DNFI+ L+W K
Sbjct: 927 YEPYEQCSRSNSHATCSSRDDNFILKRGRVLSWAAK 962
>05_06_0249 +
26678486-26679270,26679330-26679891,26679930-26680049,
26680296-26680382
Length = 517
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 77 SLSRYITAWLGK*RNSLRYQSSKLITKSMTRKVINYLQI*QKYLIFSNIFL 229
SL +IT W G+ N + +Q SKL K + VI + ++ + F N +
Sbjct: 395 SLHIHITPWEGETCNDILWQPSKLQHKRLKELVIIGFEGTERQIYFVNFVI 445
>07_03_1187 +
24667044-24667091,24667196-24667274,24667520-24667695,
24668216-24668766,24669080-24669941
Length = 571
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 49 CLTAETSDNFIVTIYNSLAWKVKKFI 126
CL A ++ NF+V IY + +K+KK +
Sbjct: 543 CLAAISAVNFVVYIYFASKYKLKKAV 568
>09_02_0077 +
3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 88 IYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAE 201
+Y + W++ + V K D E D G+ SNL+E
Sbjct: 810 VYIEVTWQISLLSDSKVEKQDMEQDDVPGDASVSNLSE 847
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 25.8 bits (54), Expect = 4.9
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +1
Query: 46 SCLTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHI 225
S L ++ I I N K +KF+E ++ + YDP+ +K S ++P HI
Sbjct: 2 SKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLP----HI 57
Query: 226 PTRK 237
P K
Sbjct: 58 PRPK 61
>01_01_0407 - 3067071-3070085
Length = 1004
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 67 SDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIP 207
S+NFI T+ + WK+ + + + V D KGN S+ A IP
Sbjct: 453 SNNFIGTVELTSMWKLLDLFVLDLSDNNLVVVDGKGN---SSTASIP 496
>07_03_0741 -
21107566-21107838,21107964-21108102,21108189-21108426,
21108629-21108836,21108945-21109066,21109146-21109271,
21109356-21109774,21109844-21110268
Length = 649
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 180 FITFRVIDFVISFDDWYLNEFLHFPSQA 97
F +R +DF +S D W +++ + +P QA
Sbjct: 122 FSRYRFMDF-LSPDQWQVSQMIWYPEQA 148
>01_06_0727 - 31517592-31518600,31519999-31520225
Length = 411
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 4 IRHEDYDRCHFNESSCLTAETS 69
+ + DY CH+N +C T T+
Sbjct: 309 VNNSDYICCHYNAPNCSTTTTT 330
>01_07_0229 + 42161770-42164562
Length = 930
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 10 HEDYDRCHFNESSCLTAE 63
H DYD E SCLT E
Sbjct: 624 HMDYDEFRIEELSCLTRE 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,542,253
Number of Sequences: 37544
Number of extensions: 107381
Number of successful extensions: 262
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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