Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G05
         (209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    23   7.3  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    22   9.6  
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    22   9.6  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    22   9.6  
SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...    22   9.6  

>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 56  VLHMI-TRFNPLGSLHSLPERFKIQVFPRRY 145
           VL+ + T  NP GS  SL  R K+    R+Y
Sbjct: 207 VLYTVPTGQNPTGSTLSLSRRKKLLALARKY 237


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 54  FQ*YHGFSVLPSCRNSAA 1
           FQ   G +VLP+CR+ AA
Sbjct: 327 FQRNKGRNVLPACRDFAA 344


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 38  PWYHWKVLHMITRFNPLGSLHSLPE-RFKIQVFP 136
           P+Y WK ++ +T   P   +  + + R K +V P
Sbjct: 100 PFYKWKKINTLTLVEPAEKMREIADARAKKKVPP 133


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 56  VLHMITRFNPLGSLHSLPERFKIQVFP 136
           VLH +TR   L S     ++F +Q FP
Sbjct: 636 VLHFVTRLLNLRSRLVPYQKFLLQTFP 662


>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 180 DYYYRFYSGIH 148
           D+Y R+YSG H
Sbjct: 3   DFYVRYYSGHH 13


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 820,923
Number of Sequences: 5004
Number of extensions: 13496
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)