Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G05
         (209 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0760 + 6910325-6910558,6911305-6911455,6911949-6912115,691...    27   2.7  
06_01_0463 - 3293189-3294340,3294424-3294687,3294904-3295164           27   2.7  
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923           26   4.8  
03_04_0212 + 18670122-18670326,18671946-18672385                       26   4.8  
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574...    25   6.3  
02_02_0725 + 13367157-13367364,13367492-13367773,13367985-13369195     25   6.3  
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514           25   8.4  
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294           25   8.4  

>12_01_0760 +
           6910325-6910558,6911305-6911455,6911949-6912115,
           6912227-6912309,6912395-6912773
          Length = 337

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 192 FHVFDYYYRFY 160
           FHVFDYY R+Y
Sbjct: 276 FHVFDYYDRYY 286


>06_01_0463 - 3293189-3294340,3294424-3294687,3294904-3295164
          Length = 558

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 73  SNHM*HFPVIPWFQR 29
           SNH   FPV+PW QR
Sbjct: 358 SNHQSVFPVLPWSQR 372


>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
          Length = 128

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 53  KVLHMITRFNPLGSLHSLPERFKIQVFPR 139
           KVLH+ TR +P G   +  +RF+++V  R
Sbjct: 68  KVLHITTRKSPCGEGTNTWDRFEMRVHKR 96


>03_04_0212 + 18670122-18670326,18671946-18672385
          Length = 214

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 26  RTLKPWYHWKVLHMITRFNPLGSLH 100
           R   PWY   V +M++++ PLG  H
Sbjct: 19  RDSNPWYANIVNYMVSKYIPLGENH 43


>08_02_1236 +
           25454371-25456801,25456891-25457177,25457258-25457416,
           25457561-25457740,25457823-25458017,25459059-25459157,
           25459508-25460137,25460250-25460591
          Length = 1440

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 7   GISARGKDAETMVSLESATYDY 72
           G +++G+D ET   L +AT DY
Sbjct: 336 GSNSKGEDTETFEELVTATVDY 357


>02_02_0725 + 13367157-13367364,13367492-13367773,13367985-13369195
          Length = 566

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 118 QDPGFPKAISMNAGVEAVVIVKDVEA 195
           Q+PGFP A S   G+ A +  K+ +A
Sbjct: 125 QEPGFPSAESQEPGLPAALSRKEDDA 150


>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
          Length = 130

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 53  KVLHMITRFNPLGSLHSLPERFKIQVFPR 139
           KVLH+ TR +P G   +  +RF+ ++  R
Sbjct: 70  KVLHITTRKSPCGEGTNTWDRFEFRIHKR 98


>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
          Length = 127

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 53  KVLHMITRFNPLGSLHSLPERFKIQVFPR 139
           KVLH+ TR +P G   +  +RF+ ++  R
Sbjct: 67  KVLHITTRKSPCGEGTNTWDRFEFRIHKR 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,158,714
Number of Sequences: 37544
Number of extensions: 82819
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)