Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G05
         (209 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29381-7|AAA68755.1|  225|Caenorhabditis elegans Hypothetical pr...    30   0.20 
U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 rela...    29   0.34 
AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell fac...    29   0.34 
Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z37092-7|CAA85457.1|  472|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AY037793-1|AAK94758.1|  472|Caenorhabditis elegans GLY-1 protein.      27   1.8  
AY037792-2|AAK94757.1|  472|Caenorhabditis elegans GLY-1 protein.      27   1.8  
AC024753-11|AAF60461.1|  369|Caenorhabditis elegans Hypothetical...    26   3.2  
U41029-1|AAF99951.1|  479|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U29381-7|AAA68755.1|  225|Caenorhabditis elegans Hypothetical
           protein F35D11.9 protein.
          Length = 225

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 201 RNCFHVFDYYYRFYSGIH*YRL-GKTWILNLSGKEWSEPKGLNLVIICSTF 52
           R+C  + D YY F +G H Y + G+T +L   G++  + K     ++C  F
Sbjct: 173 RDCNALTDAYYYFSNGTHFYAVDGRTELLGCFGEKDKQNKHEYSSVLCGRF 223


>U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 related
           protein 1 protein.
          Length = 782

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 162 YSGIH*YRLGKTWILNLSGKEWSEPK 85
           Y G++  RLG  W LNL+   W+E K
Sbjct: 231 YGGMNGVRLGDLWYLNLNTLHWTEIK 256


>AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell factor
           1 protein.
          Length = 782

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 162 YSGIH*YRLGKTWILNLSGKEWSEPK 85
           Y G++  RLG  W LNL+   W+E K
Sbjct: 231 YGGMNGVRLGDLWYLNLNTLHWTEIK 256


>Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical
           protein AC3.5 protein.
          Length = 1090

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 26  RTLKPWYHWKVLHMITRFNPLGSLHSLPERFKI 124
           R  K W++W+V   +    P+G++  L E F++
Sbjct: 688 RNAKYWFNWEVPLFLKSSGPVGNVSWLHEAFRL 720


>Z37092-7|CAA85457.1|  472|Caenorhabditis elegans Hypothetical
           protein F44F4.6 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 102 EWSEPKGLNLVIICSTFQ*YHGFSVLPSCRNSA 4
           +W E +  N   +CST   Y  F+ +PS R  A
Sbjct: 93  DWVEHEIFNSRNVCSTIDKYFNFTRIPSSREEA 125


>AY037793-1|AAK94758.1|  472|Caenorhabditis elegans GLY-1 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 102 EWSEPKGLNLVIICSTFQ*YHGFSVLPSCRNSA 4
           +W E +  N   +CST   Y  F+ +PS R  A
Sbjct: 93  DWVEHEIFNSRNVCSTIDKYFNFTRIPSSREEA 125


>AY037792-2|AAK94757.1|  472|Caenorhabditis elegans GLY-1 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 102 EWSEPKGLNLVIICSTFQ*YHGFSVLPSCRNSA 4
           +W E +  N   +CST   Y  F+ +PS R  A
Sbjct: 93  DWVEHEIFNSRNVCSTIDKYFNFTRIPSSREEA 125


>AC024753-11|AAF60461.1|  369|Caenorhabditis elegans Hypothetical
           protein Y23H5B.1 protein.
          Length = 369

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 44  YHWKVLHMITRFNPLGSLHSLPERFKIQ 127
           Y W  L+  + +N +G++HSLP++  +Q
Sbjct: 212 YTWD-LNQESPYNSVGTIHSLPKKIALQ 238


>U41029-1|AAF99951.1|  479|Caenorhabditis elegans Hypothetical
           protein F47G3.3 protein.
          Length = 479

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 68  ITRFNPLGSLHSLPERFKIQVF 133
           IT  N  GSLH+L +  K+Q+F
Sbjct: 15  ITLGNLTGSLHTLHQNVKLQIF 36


>U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical
           protein F01G12.1 protein.
          Length = 178

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 17  HEGRTLKPWYHW 52
           H+  T+K W+HW
Sbjct: 113 HDHHTMKMWFHW 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,381,041
Number of Sequences: 27780
Number of extensions: 70107
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)