Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G04
(206 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe... 26 0.78
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 24 3.2
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 24 3.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 23 4.2
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 23 4.2
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer... 23 5.5
SPAPJ691.03 |||DUF543 family protein|Schizosaccharomyces pombe|c... 23 7.3
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 23 7.3
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 23 7.3
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 22 9.6
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 22 9.6
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 22 9.6
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 22 9.6
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 22 9.6
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 22 9.6
>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 0.78
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 189 NFSVHLVIQFSDGEIPSSQTIS 124
N S+HLV+ +DG +P + I+
Sbjct: 212 NQSIHLVVDMTDGNVPIYKAIA 233
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 148 DTFIPNYINARP 113
DTFIP Y+NA P
Sbjct: 744 DTFIPCYVNAFP 755
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 23.8 bits (49), Expect = 3.2
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +3
Query: 27 ISYWKGCITGMSYA 68
+ YWK C+ ++YA
Sbjct: 453 VDYWKDCLINLTYA 466
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 56 NVLCVQQPQ-NPMLTCLQTKWPSI 124
N+L Q P ++TC+ KWP I
Sbjct: 1850 NILQSQLPVLESVITCINKKWPCI 1873
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 45 CITGMSYACSNHRIRCSHAYKPNGL 119
C TG Y S+ + C + +P GL
Sbjct: 31 CFTGADYLESDIELICQNEIQPQGL 55
>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 36 WKGCITGMSYACSNHRIRCSH 98
WK + G Y N+ RCSH
Sbjct: 95 WKTSLLGAFYIKPNYPGRCSH 115
>SPAPJ691.03 |||DUF543 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 86
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 54 GMSYACSNHRIRCSHA 101
G SYA SN R+R HA
Sbjct: 57 GKSYADSNARLRTFHA 72
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 165 QFSDGEIPSSQTISM 121
+F DG+IP+ Q I+M
Sbjct: 767 EFCDGQIPNIQNINM 781
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 22.6 bits (46), Expect = 7.3
Identities = 6/19 (31%), Positives = 11/19 (57%)
Frame = +2
Query: 68 VQQPQNPMLTCLQTKWPSI 124
++ P+ P C+Q WP +
Sbjct: 398 IENPEIPNWYCIQVMWPVV 416
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 179 CTWSFNLVMVRYLHPKLYQC 120
C SFN+ +L P++ QC
Sbjct: 565 CKTSFNMYFPIFLLPRIEQC 584
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 25 VYRTGRAALLECPMRAATTES 87
V GR L++C +RAA + S
Sbjct: 350 VVGAGRGPLVDCALRAAISSS 370
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = -3
Query: 93 SIG-FCGCCTHRTFQ*CSPSSTIY 25
S+G FC H CSPS ++
Sbjct: 288 SLGKFCSFLNHNLLSLCSPSGVLF 311
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 32 VLEGLHYWNVLCVQQPQNPMLTCL 103
+ +GL Y+ VLC P+N ++ L
Sbjct: 351 IFKGLSYFTVLCWIWPKNRVVNQL 374
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 66 ACSNHRIRCSHAYKPN 113
ACSN+++ C +PN
Sbjct: 43 ACSNNKVECIWPDRPN 58
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +2
Query: 44 LHYWNVLCVQQPQNPMLTCLQTK 112
+HYWN LC +N L K
Sbjct: 368 MHYWNNLCQSFFENSRSLILHEK 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 967,634
Number of Sequences: 5004
Number of extensions: 16881
Number of successful extensions: 42
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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