Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G04
(206 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0069 + 20668500-20668622,20669270-20669521 27 2.7
02_05_1149 + 34471730-34471790,34471975-34472056,34472605-344732... 26 3.6
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631... 25 6.3
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 25 6.3
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 25 6.3
09_04_0657 + 19271266-19271388,19271906-19271910,19272005-192720... 25 8.4
04_04_1012 - 30104401-30104955,30105066-30106841 25 8.4
04_04_1005 - 30043698-30044252,30044363-30046138 25 8.4
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 25 8.4
>09_06_0069 + 20668500-20668622,20669270-20669521
Length = 124
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +2
Query: 41 GLHYWNVLCVQQPQNPMLTCLQTK-WPSIDIVWDEG 145
GL WN P NP LTC + W +W G
Sbjct: 78 GLQVWNDGEPNNPLNPTLTCASVRLWAPAVRLWGPG 113
>02_05_1149 +
34471730-34471790,34471975-34472056,34472605-34473299,
34473375-34473631,34473726-34474407,34474481-34474684,
34474773-34474903,34475068-34475263,34475347-34475587,
34476067-34476214
Length = 898
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 46 ALLECPMRAATTESDAHMP 102
ALL CP R T +SD H P
Sbjct: 747 ALLMCPPRGHTQQSDHHSP 765
>04_03_0926 -
20861383-20862198,20862359-20862430,20862938-20863123,
20863214-20863304,20863698-20863852,20864501-20864579,
20866797-20867263
Length = 621
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 68 VQQPQN-PMLTCLQTKWPSIDIVWDEGISPSL 160
VQ Q+ P++ C++T+WP W G PS+
Sbjct: 590 VQTSQHAPLVDCIRTRWPRAVCSW-VGDMPSI 620
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 113 WPSIDIVWDEGISPSLN 163
+P+ I+WDE + PS+N
Sbjct: 488 YPNEQIMWDESLVPSIN 504
>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +3
Query: 45 CITGMSYACSNHRIRCSHAYKPNGLAL 125
C + CS+ +RC Y P G L
Sbjct: 2009 CAAALLMGCSSGTLRCKGCYAPQGAPL 2035
>09_04_0657 +
19271266-19271388,19271906-19271910,19272005-19272067,
19272150-19272256,19272321-19272418,19273070-19273162,
19273279-19273320,19273464-19273619
Length = 228
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 101 LQTKWPSIDIVWDEGISPS 157
L+ K+PS+DI D G+ PS
Sbjct: 167 LRKKYPSLDIEVDGGLGPS 185
>04_04_1012 - 30104401-30104955,30105066-30106841
Length = 776
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 32 VLEGLHYWNVLCVQQPQNPMLTCLQTKWPSIDIVWDEGISPSLN 163
+L LH + LC + N + Q +W + I+ D+ +P+L+
Sbjct: 465 LLHALHNSSFLCQEPQTNTLSPVSQLQW--LSIIADKAATPALS 506
>04_04_1005 - 30043698-30044252,30044363-30046138
Length = 776
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 32 VLEGLHYWNVLCVQQPQNPMLTCLQTKWPSIDIVWDEGISPSLN 163
+L LH + LC + N + Q +W + I+ D+ +P+L+
Sbjct: 465 LLHALHNSSFLCQEPQTNTLSPVSQLQW--LSIIADKAATPALS 506
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -3
Query: 183 SVHLVIQFSDGEIPSSQTISMLGHLVCRHVSIGFCGCCTHRTFQ*CSPSSTIYPSCRINA 4
+VH+++Q ++PS Q +S+L HL S RT C P++ +NA
Sbjct: 114 AVHILVQ---AQMPS-QAMSVLRHLALTGFSCSAIFSSLLRTISRCDPTNLFSVDLLVNA 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,263,823
Number of Sequences: 37544
Number of extensions: 112740
Number of successful extensions: 233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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