Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G04
         (206 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical...    30   0.20 
Z81069-1|CAB02990.1|  359|Caenorhabditis elegans Hypothetical pr...    28   1.0  
AC006605-3|AAK85442.1|  933|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical ...    25   5.6  
U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical
           protein Y47D3A.22 protein.
          Length = 765

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 5   ALIRHEGYI--VLEGLHYWNV-LCVQQPQNPMLTCLQTKWP 118
           AL+ H GYI  + E  H  NV +    PQNP L  L T+WP
Sbjct: 51  ALLGHIGYIESINEHRHTANVRVYYAVPQNPELFKLSTEWP 91


>Z81069-1|CAB02990.1|  359|Caenorhabditis elegans Hypothetical
           protein F25H9.1 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 30  SYWKGCITGMSYACSNHRIRCSHAY 104
           SY+KGCIT        HRI+  H+Y
Sbjct: 277 SYYKGCITANEQ--GEHRIQLGHSY 299


>AC006605-3|AAK85442.1|  933|Caenorhabditis elegans Hypothetical
           protein C07H6.4 protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 26  YIVLEGLHYWNVLCVQQPQNPMLTCL 103
           Y+V EG  +  ++C ++ QNPM   L
Sbjct: 374 YVVTEGPQFEAMICAEEFQNPMFQFL 399


>Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical
           protein F09A5.2 protein.
          Length = 894

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 192 WNFSVHLVIQFSDGEI--PSSQTISMLGHLV 106
           W+F V L   FS G++  P+ Q + ML HL+
Sbjct: 712 WSFGVLLFEIFSMGDVPYPTIQQVDMLEHLL 742


>AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical
           protein C17E7.7 protein.
          Length = 395

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 72  CTHRTFQ*CSPSSTIYPSCR 13
           C++  F+  S  STIYP C+
Sbjct: 93  CSNNCFEGFSEDSTIYPKCK 112


>U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical
           protein C41A3.2a protein.
          Length = 795

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 78  GCCTHRTFQ*CSPSSTIYPSCRIN 7
           GC   + FQ C  +S  YP   IN
Sbjct: 627 GCFISKIFQICKENSPTYPESPIN 650


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,356,906
Number of Sequences: 27780
Number of extensions: 97121
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)