Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G04
         (206 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   2.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   2.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   3.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   4.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   8.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   8.2  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 31  RTGRAALLECPMRAATTESDAHMPTNQMA 117
           R+GR   ++  +  A  +SD H  T ++A
Sbjct: 62  RSGRPVEVDDDLIKAIIDSDRHSTTREIA 90


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 2.7
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +2

Query: 11  IRHEGYIVLEGLHYWN---VLCVQQPQNPMLTCL 103
           I   GY VL+ + YW    V  V++ + P  T +
Sbjct: 179 IESYGYTVLDVVMYWKETPVRGVEEAELPQFTII 212


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.8 bits (39), Expect = 3.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 60  SYACSNHRIRC 92
           S  CS H +RC
Sbjct: 289 STTCSGHTVRC 299


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 8/27 (29%), Positives = 10/27 (37%)
 Frame = +3

Query: 33  YWKGCITGMSYACSNHRIRCSHAYKPN 113
           YW  CI  MS            + KP+
Sbjct: 338 YWLPCILRMSRPSDKEEREAQKSQKPS 364


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 56  NVLCVQQPQNPMLTCLQTKWPSIDIVWDEGISPSL 160
           +VL   +P    LT ++  WP   +     I+P +
Sbjct: 203 DVLVETEPIYYNLTMVKLNWPKKRVTKMSSINPCI 237


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
          protein.
          Length = 484

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 29 IVLEGLHYW 55
          IVL GL YW
Sbjct: 72 IVLGGLTYW 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,393
Number of Sequences: 438
Number of extensions: 1145
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2912559
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)