Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G02
         (166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   1.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   1.3  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    23   7.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    22   9.4  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 97  YSFVLVTETMPTRPFRHRTER*RPDTDFMKRI 2
           YS+V++ + + TRP  + T+R + D D ++ +
Sbjct: 371 YSYVVIQKGI-TRPLNNTTQRFKNDEDLLENV 401


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 97  YSFVLVTETMPTRPFRHRTER*RPDTDFMKRI 2
           YS+V++ + + TRP  + T+R + D D ++ +
Sbjct: 371 YSYVVIQKGI-TRPLNNTTQRFKNDEDLLENV 401


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 60  LVGIVSVTNTKLYFLHVAAGTVTS*YDTF 146
           +VGIVS     L  +H+A+  +   +DT+
Sbjct: 181 VVGIVSHAEKILKVIHIASSDLDELWDTY 209


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 139  SYYDVTVPAATCKKYSFVLVTETMPT 62
            S+ D+T+PA    + S     +T PT
Sbjct: 2023 SFLDITLPAKDANRASHYPFPKTQPT 2048


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,185
Number of Sequences: 5004
Number of extensions: 7086
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)