Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G02
         (166 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97405-4|AAB53009.1|  342|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AC006625-8|AAK68270.2|  127|Caenorhabditis elegans Hypothetical ...    27   1.8  
AL032626-4|CAA21524.1|  227|Caenorhabditis elegans Hypothetical ...    25   5.5  

>U97405-4|AAB53009.1|  342|Caenorhabditis elegans Hypothetical
           protein T09B4.7 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 2   YSLHEIGVGTLPFRSVTERSS 64
           Y L E+  GTLP+R+V +RSS
Sbjct: 209 YGLVEMTRGTLPWRNVVDRSS 229


>AC006625-8|AAK68270.2|  127|Caenorhabditis elegans Hypothetical
           protein C55B7.10 protein.
          Length = 127

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 2   YSLHEIGVGTLPFRSVTERSS 64
           Y L E+  GTLP+R+V +RSS
Sbjct: 54  YGLVEMTRGTLPWRNVVDRSS 74


>AL032626-4|CAA21524.1|  227|Caenorhabditis elegans Hypothetical
           protein Y37D8A.4 protein.
          Length = 227

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 88  QNYIFCMWRRVRLRHSMIRS 147
           Q Y+  +WR+ ++ H +IR+
Sbjct: 151 QKYVLSIWRKTKVEHLVIRN 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,370
Number of Sequences: 27780
Number of extensions: 39781
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)