Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_F24
(394 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 1e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 6e-04
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 38 7e-04
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 37 0.001
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 35 0.005
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 34 0.007
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.016
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.021
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 32 0.028
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.028
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.037
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 30 0.11
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 30 0.11
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.26
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.34
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 28 0.45
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 0.56
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 1.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 1.4
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 1.8
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 1.8
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 3.2
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 3.2
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 4.2
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 25 5.5
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 24 7.3
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 24 7.3
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 24 7.3
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.9 bits (89), Expect = 1e-04
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 16/98 (16%)
Frame = +1
Query: 145 LTLDRHAMKD-RST--AHLRIYVGGLTEKATVDDVYERFIEYGPIDG--VVTTK------ 291
+ L++ + K+ RST + IYVG L D++E F +G +++ K
Sbjct: 2 IALEKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTD 61
Query: 292 -----LFGFVQFRNETSAQQAISKANGSIFQGKNINVK 390
LF F+ F N+ SA AI+ NGS FQG + V+
Sbjct: 62 SKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
Score = 28.3 bits (60), Expect = 0.45
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINV 387
+K +GFV F + A QAI+ NG +F K + V
Sbjct: 461 SKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.9 bits (84), Expect = 6e-04
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDVYERFIEYGPIDGVVT-------TKLFGFVQFRNETSAQQAISKA 351
R+ V + T +DV F +G I+ V +K FG++Q+RN SA+ A+ K
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 352 NGSIFQGKNINV 387
NG G+N+ V
Sbjct: 401 NGFDLAGRNMRV 412
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 37.5 bits (83), Expect = 7e-04
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDVYERFIEYGPIDGVVTTKLFGFVQFRNETSAQQAISKANGSIFQG 372
R++VG + +AT +D+ + F YG I FGFV+ + A+ ++ G F G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64
Query: 373 KNINVK 390
I V+
Sbjct: 65 SRIVVE 70
Score = 25.4 bits (53), Expect = 3.2
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = +1
Query: 298 GFVQFRNETSAQQAISKANGSIFQGKNINVK 390
G V+F E + A++ NG + +G+ + ++
Sbjct: 137 GVVEFSTEEDMRNALTSLNGEVIKGQAVTLR 167
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 36.7 bits (81), Expect = 0.001
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +1
Query: 193 RIYVGGLTEKA-TVDDVYERFIEYGPIDGVVTTKLFGFVQFRNETSAQQAISKANGSIFQ 369
R+++G L K+ + ++++ F YGP+ +V +GFVQF +A++ G+ +
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVR 423
Query: 370 GKNINVK 390
G+ ++++
Sbjct: 424 GQKLHLE 430
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 34.7 bits (76), Expect = 0.005
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Frame = +1
Query: 196 IYVGGLTEKATVDDVYER-FIEYGPID--GVVTTKLFGFVQFRNETSAQQA-ISKANGSI 363
+YVGG+T ++++ R F E+G I+ V+ ++ F+ + NE +AQ A + A+ S+
Sbjct: 176 LYVGGITPTDDIEEIVSRHFAEWGDIERIRVLNSRGIAFITYLNEANAQFAKEAMAHQSL 235
Query: 364 FQGKNINVK 390
+ +NV+
Sbjct: 236 DHDECLNVR 244
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 34.3 bits (75), Expect = 0.007
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +1
Query: 223 ATVDDVYERFIEYGPIDGVVTTK-----LFGFVQFRNETSAQQAISKANGSIFQGKNINV 387
ATV D ++ ++GP+ V K + FVQF+N A +A+S+A +I G++I +
Sbjct: 97 ATVKDYFQ---QWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRI 153
Query: 388 K 390
+
Sbjct: 154 E 154
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.1 bits (72), Expect = 0.016
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = +1
Query: 196 IYVGGLTEKATVDDVYERFIEYGPIDGVVTTKL-------FGFVQFRNETSAQQAISKAN 354
+Y+ L + T + + F ++G I + K FGFV + N AQ+A+ + N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 355 GSIFQGKNINV 387
++GK + V
Sbjct: 323 DKEYKGKKLYV 333
Score = 29.5 bits (63), Expect = 0.19
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Frame = +1
Query: 196 IYVGGLTEKATVDDVYERFIEYGPI-------DGVVTTKL-FGFVQFRNETSAQQAISKA 351
+YVG L T ++E F GP+ D V L + +V F N ++A+ +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 352 NGSIFQGK 375
N ++ +G+
Sbjct: 142 NYTLIKGR 149
Score = 29.5 bits (63), Expect = 0.19
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 268 IDGVVTTKLFGFVQFRNETSAQQAISKANGSIFQGKNINV 387
+D + K +GFV F + SA AI NG + K + V
Sbjct: 201 VDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.7 bits (71), Expect = 0.021
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDVYERFIEYGPIDG---------VVTTKLFGFVQFR-NETSAQQAI 342
RIYVGGL+ D+ RF +G + V T + F ++ FR +E Q+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 343 SKANGSIFQGKNINVK 390
S + + F+G + ++
Sbjct: 66 SYLSNATFKGSKLRIE 81
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.3 bits (70), Expect = 0.028
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +1
Query: 196 IYVGGLTEKATVDDVYERFIEYGPIDGV------VT--TKLFGFVQFRNETSAQQAISKA 351
++V G+ + D++ + F ++G + V VT ++ FGF+ F A AI
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 352 NGSIFQGKNINVK 390
N F G+ +NV+
Sbjct: 163 NSQEFYGRVLNVQ 175
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 32.3 bits (70), Expect = 0.028
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = +1
Query: 187 HLRIYVGGLTEKATVDDVYERFIEYGPI-------DGVVTTKLFGFVQFRNETSAQQAIS 345
H R++VG L + +Y+ F EY + D T+ FGFV F++ +A
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWR 88
Query: 346 KANGSIFQGKNINV 387
+ NG + + +
Sbjct: 89 EKNGKYIGSRPVKL 102
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.9 bits (69), Expect = 0.037
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 295 FGFVQFRNETSAQQAISKANGSIFQGKNINVK 390
FGFV+F+++ SA A+ NG + G + +K
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIK 698
Score = 26.2 bits (55), Expect = 1.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINV 387
++ F F+ F+NE A +AI N S + I V
Sbjct: 45 SRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEV 78
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.3 bits (65), Expect = 0.11
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 184 AHLRIYVGGLTEKATVDDVYERFIEYGPIDGV--VTTKLFGFVQFRNETSAQQAISK 348
A IY+G + T++ + E F E+G I+ V K FV F + SA AI +
Sbjct: 412 ASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDR 468
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 30.3 bits (65), Expect = 0.11
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Frame = +1
Query: 154 DRHAMKDRSTAHLRIYVGGLTEKATVDDVYERFIEYGPIDGV------VTTKLFG--FVQ 309
DRH + D + +++ L+ D+ F YGPI+ + VT K G FV
Sbjct: 91 DRHVIGD---PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVV 147
Query: 310 FRNETSAQQAISKANGSIFQGKNINV 387
F E + A + G + G+ I V
Sbjct: 148 FERERDLKVAYKASAGLMLNGRRIVV 173
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.1 bits (62), Expect = 0.26
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +1
Query: 196 IYVGGLTEKATVDDVYERFIEYGPI-------DGVVTT-KLFGFVQFRNETSAQQAISKA 351
IY+G L EK T ++E ++ GP+ D V + FGF +F +E + A
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 352 NGSIFQGKNINV 387
N GK I V
Sbjct: 73 NQVKLFGKPIRV 84
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 0.34
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 265 PIDGVVTTKLFGFVQFRNETSAQQAISKANGSIFQGKNINV 387
P+ G+ ++ +GFV+F +E Q A+ G + QG+ + +
Sbjct: 218 PVTGL--SRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRI 256
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 0.45
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDVYERFIEYGPI-DGVV----TT---KLFGFVQFRNETSAQQAISK 348
++++GGL + T D + + F ++G + D V TT + FGF+ F+N + +SK
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 349 ANGSIFQGKNINVK 390
+ GK I+ K
Sbjct: 224 EHH--LDGKIIDPK 235
Score = 26.6 bits (56), Expect = 1.4
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDVYERFIEYGPI-DGVVTT-------KLFGFVQFRNETSAQQAISK 348
+++VGG+ T ++ F ++G + D + + FGFV + NE++ + +S+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 349 ANGSIFQGKNINVK 390
+I GK + VK
Sbjct: 308 PYITI-HGKPVEVK 320
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 24.6 bits (51), Expect(2) = 0.56
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 295 FGFVQFRNETSAQQAISKANG 357
FGFV F N +AI + NG
Sbjct: 260 FGFVSFANAEDQSRAIEEMNG 280
Score = 21.8 bits (44), Expect(2) = 0.56
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 196 IYVGGLTEKATVDDVYERFIEYGP 267
IYV GL+ T + + E F Y P
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNP 230
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.1 bits (57), Expect = 1.0
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = +3
Query: 162 CDERQIDSSS*NICWWS---YRKSYG 230
C R++ S NI WWS Y K YG
Sbjct: 1769 CLSREVKQDSANISWWSGKWYGKGYG 1794
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 1.4
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Frame = +1
Query: 196 IYVGGLTEKATVDDVYERFIEYGPIDGV-VTT-------KLFGFVQFRNETSAQQAISKA 351
++VG L+ AT DD+ F G I + + T K FG+V F + SA++ + +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EM 426
Query: 352 NGSIFQGK 375
NG G+
Sbjct: 427 NGHFIAGR 434
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 1.8
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 196 IYVGGLTEKATVDDVYERFIEYGPIDGVVTTKLFGF 303
IYVG + + + +++ + F +YG ++ + L F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSF 54
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 1.8
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Frame = +1
Query: 154 DRHAMKDRSTAHLRIYVGGLTEKATVDDVYERFIEYGPI----------DGVVTTKLFGF 303
D +A D + +IY+ L D V E +G + DG ++K F F
Sbjct: 298 DDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADG--SSKGFCF 355
Query: 304 VQFRNETSAQQAISKANGSIFQGKNINVK 390
+F+N + A+ AIS +G G ++ +
Sbjct: 356 CEFKNPSDAEVAISGLDGKDTYGNKLHAQ 384
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 3.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 311 N*TKPNNLVVTTPSIGPYSIKRSYTSSTVAFSVRP 207
N T PNN+ ++ PS+ +++ SS FS RP
Sbjct: 329 NVTAPNNMNISYPSVPAHTVSTDIRSS--PFSGRP 361
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 3.2
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = +1
Query: 196 IYVGGLTEKATVDDVYERFIEYGPIDGVVTTKL------FGFVQFRNETSAQQAISKANG 357
+YV + K DV F +YG ++ V K FG+V A+ A+S A G
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA-G 817
Query: 358 SIFQGKNINV 387
+ +NV
Sbjct: 818 KQLGNRVLNV 827
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 4.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 295 FGFVQFRNETSAQQAISKANGSIFQGKNINV 387
F FV ++ +A++A++ NG+ G+ I V
Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 5.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 265 PIDGVVTTKLFGFVQFRNETSAQQAISKANGSIFQGKNI 381
P T LFG + +N+T +Q ++AN S+F NI
Sbjct: 120 PAQAAPTGGLFG-LSGQNQTQSQTQPAQANTSLFGQSNI 157
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 24.2 bits (50), Expect = 7.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 287 PNCSVLFSLEMKQVLSKPSVKQ 352
PNC ++F + Q++SK +K+
Sbjct: 198 PNCQIIFDGAIVQLVSKRDIKK 219
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 278 TPSIGPYSIKRSYTSSTVAFSVRPPT 201
+PS S SY+++T AFS+ P T
Sbjct: 535 SPSSSTKSASSSYSTTTPAFSIGPLT 560
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.2 bits (50), Expect = 7.3
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 276 SCYNQIVRFCS 308
SCY+ IVRFC+
Sbjct: 257 SCYSNIVRFCN 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,165
Number of Sequences: 5004
Number of extensions: 31656
Number of successful extensions: 101
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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