Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_F23
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 28 0.55
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 27 0.97
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 27 0.97
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 27 1.3
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha... 27 1.7
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha... 26 3.0
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 3.9
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 25 5.2
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 25 6.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 6.8
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 24 9.0
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 24 9.0
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 28.3 bits (60), Expect = 0.55
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 84 DSNRTLYLADT-YNHKIKKVDIGPQKVTSLNPTMIETADPAE 206
D R L+L + +N K+ K+ ++LNP + ETA+ E
Sbjct: 1404 DDQRFLWLPNRLHNSKVSKLSFTKSNKSTLNPNLKETAEELE 1445
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 0.97
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 300 AKNVCQDFKVRLAEPKFSEPDSLIIYKNDLFVNRKCGSLIICFN 431
A F + A K+ E S I+Y N+ F R GSL I N
Sbjct: 148 ANETALKFARKAAFEKYGEGKSQIVYFNNSFHGRSLGSLSITAN 191
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 27.5 bits (58), Expect = 0.97
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 274 LLVSAMYRYLPSLLAESPDGSLNSAGSAVSII 179
L++ +R+LP + PDGS G + II
Sbjct: 154 LMIEHKFRHLPVVSDGGPDGSAGDEGDVIGII 185
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +3
Query: 210 NEPSGLSASSDGKYLYIADTNNHTVKILNLAKNVCQDFKVRLAEPKFSEPDSL 368
N SGLSAS + Y++ + ++++T ++ ++ + + AE S+ D L
Sbjct: 356 NLVSGLSASPENPYMFASVSHDNTCRVWDVRATSGSIYTISRAEKTGSQWDKL 408
>SPBC20F10.06 |mad2||spindle checkpoint protein
Mad2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 1.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 150 VRYRPSLFYDCTCPLNRAFYWNRSTRRPTDAVISHPRLYRQRHRTRKAS 4
V + P L CT N Y ++ + PTD V S PR+ R + + S
Sbjct: 139 VTFLPQLEEQCT--FNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRS 185
>SPAC29B12.04 |snz1||pyridoxine biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 42 VDAKLQHPLGVAYCDSNRTLYLADTYNH 125
V+A++ +GV Y D + L AD NH
Sbjct: 90 VEAQILESIGVDYIDESEVLTPADDINH 117
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 397 LTNRSFLYMIKLSGSENFG-SARRTLKSWQTFFARLRIFTVWLLVSAM 257
L S L+M+ L+GSEN G S ++ +T + T+ +++A+
Sbjct: 317 LLRASKLHMVDLAGSENIGRSGAENKRARETGMINQSLLTLGRVINAL 364
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +3
Query: 78 YCDSNRTLYLADTYNHKIKKVDIGPQKVTSLNPTMIE 188
Y + LYL D Y +++K+ + L P ++E
Sbjct: 354 YGEEEYNLYLVDPYRYRVKRKESFYDLAVRLEPLILE 390
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 6.8
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 174 PTMIETADPAEFNEPSGLSASSDGKYLYIADTNNHTVKILN-LAKNVCQDFK 326
P+++E + P + E S L+ SSDG +L IA N V+I N KN D+K
Sbjct: 192 PSIMELS-PTTY-EVSSLAYSSDGGFLAIARVNGF-VEIWNRKTKNNRCDYK 240
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 24.6 bits (51), Expect = 6.8
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -2
Query: 377 VYDQTVRL*ELRFRETYFKVLADVLRQVENFHGVVISIGYV*VFAVAAGRKSGRFVK 207
VYD + F+++YF + D L +++ F + SI Y + + + S + K
Sbjct: 1130 VYDISFGSLTFYFQKSYFNAIYDFLLKLKRFQELFSSIRYAIYYKLYGNKVSLTYPK 1186
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 228 SASSDGKYLYIADTNNHTVKILNLAKNVCQDFKVRLAEPKFSEPDSLIIYK-ND 386
+ DGK+++I + ++L L + + +++ V L P F + Y+ ND
Sbjct: 244 TVKEDGKFVHIEKSMGWKKELLGLVQTLYKEYWVLLLFPMFFSSNWFTTYQFND 297
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 24.2 bits (50), Expect = 9.0
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -3
Query: 271 LVSAMYRYLPSLLAESPDGSLNSAGSAVSIIVGFSDVTFCGPI---STFFIL*LYVSAK 104
LV +RYLP+ +S G N + + + G +V F G I + F+I L + A+
Sbjct: 11 LVIIAFRYLPNNFNDSRLGCDNLSTVGLCLKNGTGEVLFSGLIKQMANFYIFPLLLEAR 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,891
Number of Sequences: 5004
Number of extensions: 30226
Number of successful extensions: 103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -