Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_F23
(441 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical p... 42 2e-04
Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical pr... 42 2e-04
L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleo... 42 3e-04
AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc fi... 42 3e-04
U88175-5|AAB42278.2| 350|Caenorhabditis elegans Hypothetical pr... 40 0.001
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 30 0.86
Z73976-1|CAA98289.1| 324|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 28 3.5
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge... 27 4.6
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 27 4.6
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 27 4.6
AC006642-7|AAF39828.1| 154|Caenorhabditis elegans Hypothetical ... 27 4.6
Z82085-7|CAB04988.1| 185|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z36238-8|CAH04738.1| 448|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z36238-7|CAA85278.2| 506|Caenorhabditis elegans Hypothetical pr... 27 6.0
U40934-4|AAA81682.1| 873|Caenorhabditis elegans Vacuolar h atpa... 27 6.0
AL021492-3|CAA16382.3| 893|Caenorhabditis elegans Hypothetical ... 27 6.0
AB055110-1|BAB62291.1| 873|Caenorhabditis elegans VHA-5 protein. 27 6.0
AF039710-8|AAB96686.2| 312|Caenorhabditis elegans Hypothetical ... 27 8.0
>Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/96 (27%), Positives = 48/96 (50%)
Frame = +3
Query: 9 LFAFGDVDDIGVDAKLQHPLGVAYCDSNRTLYLADTYNHKIKKVDIGPQKVTSLNPTMIE 188
LF+FG +AK +P GVA D ++Y+AD NH+++ D Q +
Sbjct: 792 LFSFGGHGQ--GNAKFNNPWGVAVDDLG-SIYVADKDNHRVQVFDKNGQFIAKFGSF--- 845
Query: 189 TADPAEFNEPSGLSASSDGKYLYIADTNNHTVKILN 296
P + N P ++ S ++Y++D++NH + + +
Sbjct: 846 GHLPGQLNSPLFIAVSRVTHHVYVSDSSNHRISVFD 881
>Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical protein
F54G8.4 protein.
Length = 974
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/96 (27%), Positives = 48/96 (50%)
Frame = +3
Query: 9 LFAFGDVDDIGVDAKLQHPLGVAYCDSNRTLYLADTYNHKIKKVDIGPQKVTSLNPTMIE 188
LF+FG +AK +P GVA D ++Y+AD NH+++ D Q +
Sbjct: 792 LFSFGGHGQ--GNAKFNNPWGVAVDDLG-SIYVADKDNHRVQVFDKNGQFIAKFGSF--- 845
Query: 189 TADPAEFNEPSGLSASSDGKYLYIADTNNHTVKILN 296
P + N P ++ S ++Y++D++NH + + +
Sbjct: 846 GHLPGQLNSPLFIAVSRVTHHVYVSDSSNHRISVFD 881
>L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleoli
protein 1 protein.
Length = 851
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +3
Query: 204 EFNEPSGLSASSDGKYLYIADTNNHTVKILNLAKNVCQDFKVRLAEPKFSEPDSLIIYKN 383
+F EPSG++ + G + +ADTNNH +++ + FK + E + D ++Y N
Sbjct: 585 QFTEPSGVAVNGQGD-IVVADTNNHRIQVFDKEGR----FKFQFGE--CGKRDGQLLYPN 637
Query: 384 DLFVNRKCGSLII 422
+ VNR G ++
Sbjct: 638 RVAVNRTTGDFVV 650
>AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc
finger protein Ncl-1 protein.
Length = 851
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +3
Query: 204 EFNEPSGLSASSDGKYLYIADTNNHTVKILNLAKNVCQDFKVRLAEPKFSEPDSLIIYKN 383
+F EPSG++ + G + +ADTNNH +++ + FK + E + D ++Y N
Sbjct: 585 QFTEPSGVAVNGQGD-IVVADTNNHRIQVFDKEGR----FKFQFGE--CGKRDGQLLYPN 637
Query: 384 DLFVNRKCGSLII 422
+ VNR G ++
Sbjct: 638 RVAVNRTTGDFVV 650
>U88175-5|AAB42278.2| 350|Caenorhabditis elegans Hypothetical
protein F21F3.1 protein.
Length = 350
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3
Query: 84 DSNRTLYLADTYNHKIKKVDIGPQK-VTSLNPTMIETADPAEFNEPSGLSASSDGKYLYI 260
D+N ++ D +H++ K+D QK V SL M+ D A F +P+ ++ + +G ++++
Sbjct: 133 DNNGDYWVTDVGSHQVHKIDAKTQKIVMSLGEKMVPGEDQAHFCKPTDVAVAKNG-HIFV 191
Query: 261 AD 266
AD
Sbjct: 192 AD 193
Score = 32.7 bits (71), Expect = 0.12
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 63 PLGVAYCDSNRTLYLADTY-NHKIKKVDIGPQKVTSLNPTMIETADPAEFNEPSGLSASS 239
P VA N +++AD Y N +I K D + +N E P+EF P LS
Sbjct: 178 PTDVAVA-KNGHIFVADGYCNSRILKFDAKGNLMAQINAATEEN-QPSEFVVPHSLSLIE 235
Query: 240 DGKYLYIADTNNHTVK 287
D + +AD N V+
Sbjct: 236 DMNIVCVADRENQRVQ 251
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 29.9 bits (64), Expect = 0.86
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 282 VKILNLAKNVCQDFKVRLAEPKFSEPDSLIIYKNDLFV 395
+ IL+L+KN+ DF + EPK+ + L D F+
Sbjct: 1236 MSILDLSKNLMYDFHYNVMEPKYGDGLKLCYQDTDSFI 1273
>Z73976-1|CAA98289.1| 324|Caenorhabditis elegans Hypothetical
protein T07C12.1 protein.
Length = 324
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 397 LTNRSFLYMIKLSGSENFGSARRTLKSWQTFFARLRIFTVWLLVSA-MYRY 248
L N FLY+I S +G+ R L + TF FTV++ V YRY
Sbjct: 20 LVNPIFLYLIFTEKSNRYGNYRFLLLFFATFNVCYSCFTVFVPVDVHTYRY 70
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 219 SGLSASSDGKYLYIADTNNH 278
+ LS SSDGK+L+ AD H
Sbjct: 326 TALSKSSDGKFLFSADAEGH 345
>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
b-box coiled coil)domain containing protein 2 protein.
Length = 1032
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +3
Query: 156 KVTSLNPTMIETADPAEFNEPSGLSASSDGKYLYIADTNNHTVKI 290
KV S+ T + + E + PSG S D + IADTNNH V +
Sbjct: 734 KVHSVFGTSQQGSTIRELHCPSGFCLS-DTDDILIADTNNHRVVV 777
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 317 LADVLRQVENFHGVVISIGYV*VFAVAAGRKSGRF 213
+AD+L + F+ ++I IGY+ + + A GRF
Sbjct: 607 IADMLEEFSQFNYIIIVIGYI-LMVIYAAFTQGRF 640
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 317 LADVLRQVENFHGVVISIGYV*VFAVAAGRKSGRF 213
+AD+L + F+ ++I IGY+ + + A GRF
Sbjct: 607 IADMLEEFSQFNYIIIVIGYI-LMVIYAAFTQGRF 640
>AC006642-7|AAF39828.1| 154|Caenorhabditis elegans Hypothetical
protein F49H12.2 protein.
Length = 154
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 123 HKIKKVDIGPQKVTSLNPTMI-ETADPAEFNE-PSGLSASSDGKYLYIADTN 272
HK++K + P+K +++ P I +T EF E P L+ +S G ++ +N
Sbjct: 99 HKVEKKEPPPKKSSNITPISISDTHFMDEFLEPPKKLNPTSSGGSFFLVSSN 150
>Z82085-7|CAB04988.1| 185|Caenorhabditis elegans Hypothetical
protein ZK218.8 protein.
Length = 185
Score = 27.1 bits (57), Expect = 6.0
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +3
Query: 69 GVAYCDSNRTLYLADTYNHKIK-----KVDIGPQKVTSLNPTMIETADPAEFNEPSG 224
G+ Y ++ Y+A YN+ IK + P+ ++ NP + ++ P N PSG
Sbjct: 48 GLHYVNAGTIEYMASEYNYTIKIKNHFVYSLAPE-LSKKNPKVKQSETPRFINPPSG 103
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/79 (21%), Positives = 35/79 (44%)
Frame = +3
Query: 63 PLGVAYCDSNRTLYLADTYNHKIKKVDIGPQKVTSLNPTMIETADPAEFNEPSGLSASSD 242
P+G+ + + +D H I+ +SLN T ++ E + P G++
Sbjct: 1319 PVGIDFDCKEEKIVWSDMSGHSIR--------TSSLNGTEHKSYFNKELSSPEGIAVDWS 1370
Query: 243 GKYLYIADTNNHTVKILNL 299
+ +Y AD+ N + + +L
Sbjct: 1371 SRNVYYADSMNDEIGVASL 1389
>Z36238-8|CAH04738.1| 448|Caenorhabditis elegans Hypothetical
protein R74.8b protein.
Length = 448
Score = 27.1 bits (57), Expect = 6.0
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Frame = +3
Query: 27 VDDIGVDAKLQHPLGVAYCDSNRTLYLADTYNHKIKKVDIGPQKVTSLNPTMIETADPAE 206
VD++ + KL +PLGV Y + ++ + D +K+ +++ V +
Sbjct: 195 VDELVNNEKLGYPLGVTYDEKSKYWIICDRNLNKVLLMNVAESDV--------RVFEGPH 246
Query: 207 FNEPSGLSASSDGKYLYI---ADTNNHTVKILNLAKNVCQDF 323
P+ ++ GK + I N H + I + + F
Sbjct: 247 LRNPTAVAVFEKGKSVVILCAPGNNQHVIYIYDFVDEIMHQF 288
>Z36238-7|CAA85278.2| 506|Caenorhabditis elegans Hypothetical
protein R74.8a protein.
Length = 506
Score = 27.1 bits (57), Expect = 6.0
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Frame = +3
Query: 27 VDDIGVDAKLQHPLGVAYCDSNRTLYLADTYNHKIKKVDIGPQKVTSLNPTMIETADPAE 206
VD++ + KL +PLGV Y + ++ + D +K+ +++ V +
Sbjct: 195 VDELVNNEKLGYPLGVTYDEKSKYWIICDRNLNKVLLMNVAESDV--------RVFEGPH 246
Query: 207 FNEPSGLSASSDGKYLYI---ADTNNHTVKILNLAKNVCQDF 323
P+ ++ GK + I N H + I + + F
Sbjct: 247 LRNPTAVAVFEKGKSVVILCAPGNNQHVIYIYDFVDEIMHQF 288
>U40934-4|AAA81682.1| 873|Caenorhabditis elegans Vacuolar h atpase
protein 5 protein.
Length = 873
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 235 LAESPDGSLNSAGSAVSIIVGFSDVTFCGPISTFF 131
+AE+ LNS +S+I+G S +TF G I +FF
Sbjct: 531 IAENKLNFLNSMKMKLSVILGISQMTF-GVILSFF 564
>AL021492-3|CAA16382.3| 893|Caenorhabditis elegans Hypothetical
protein Y45F10D.7 protein.
Length = 893
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/31 (35%), Positives = 23/31 (74%)
Frame = +3
Query: 210 NEPSGLSASSDGKYLYIADTNNHTVKILNLA 302
N+ + ++ SSDGK+L +AD N+ +++ ++A
Sbjct: 557 NKVNAMTFSSDGKWLLVAD-NDSYIRVFDVA 586
>AB055110-1|BAB62291.1| 873|Caenorhabditis elegans VHA-5 protein.
Length = 873
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 235 LAESPDGSLNSAGSAVSIIVGFSDVTFCGPISTFF 131
+AE+ LNS +S+I+G S +TF G I +FF
Sbjct: 531 IAENKLNFLNSMKMKLSVILGISQMTF-GVILSFF 564
>AF039710-8|AAB96686.2| 312|Caenorhabditis elegans Hypothetical
protein C46E10.1 protein.
Length = 312
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 201 AEFNEPSGLSASSDGKYLYIADTNNHTVKILN 296
AE NE DG ++Y D N H + +++
Sbjct: 29 AEENEERKKICGGDGAWVYYGDNNEHVIDLIS 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,058,179
Number of Sequences: 27780
Number of extensions: 167195
Number of successful extensions: 631
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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