Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F22
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469...    28   2.6  
05_03_0297 - 11911699-11911772,11911987-11912072,11912245-119123...    27   6.0  
10_08_0556 - 18739091-18739399,18740126-18740325,18740453-187405...    26   7.9  

>04_04_1323 +
           32644956-32645096,32645488-32646126,32646701-32646907,
           32647020-32647100,32647686-32648566,32648641-32648932,
           32649657-32650673,32651334-32651605,32651992-32652493
          Length = 1343

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 223 SPPFIGIFLSCGVHKFSLIFVHLVIRI*QL*FLNSD 330
           +PP I  F+SCG++K   I    V R+ ++ FLN D
Sbjct: 686 APPLIDRFISCGMNKLHEIPTEEVPRMDKI-FLNGD 720


>05_03_0297 -
           11911699-11911772,11911987-11912072,11912245-11912332,
           11912592-11912719,11913540-11913961,11931803-11932423
          Length = 472

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 223 SPPFIGIFLSCGVHK 267
           SPPFI + LSC +H+
Sbjct: 270 SPPFISLALSCAMHR 284


>10_08_0556 -
           18739091-18739399,18740126-18740325,18740453-18740501,
           18741151-18741285
          Length = 230

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 203 YDVNKLIRLLLLAFSYLVGSTNL-A*FLFIW*SGYNN 310
           +D NK++ LLL A + L+GS  + A F F   SG  N
Sbjct: 73  HDTNKMVHLLLHAIALLLGSVGIYAAFKFHNESGIAN 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,829,749
Number of Sequences: 37544
Number of extensions: 101083
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)