Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F22
         (365 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY928610-3|AAX28845.1|  487|Drosophila melanogaster envelope pro...    27   10.0 
AY061584-1|AAL29132.1|  487|Drosophila melanogaster SD03311p pro...    27   10.0 
AJ001516-1|CAC79666.1|  550|Drosophila melanogaster env protein ...    27   10.0 

>AY928610-3|AAX28845.1|  487|Drosophila melanogaster envelope
           protein protein.
          Length = 487

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = -3

Query: 210 TSYNRIYYHIN--NLILLDVAVL--AVTNM*LYLNHVNSEKIVTQRLLSRI 70
           TS N+IY H+N  + +L ++  L     N+ L++NH+N   I    LL++I
Sbjct: 123 TSQNKIYKHLNLQDTLLEEIQYLNRINYNIELFINHLND--ITESMLLAKI 171


>AY061584-1|AAL29132.1|  487|Drosophila melanogaster SD03311p
           protein.
          Length = 487

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = -3

Query: 210 TSYNRIYYHIN--NLILLDVAVL--AVTNM*LYLNHVNSEKIVTQRLLSRI 70
           TS N+IY H+N  + +L ++  L     N+ L++NH+N   I    LL++I
Sbjct: 123 TSQNKIYKHLNLQDTLLEEIQYLNRINYNIELFINHLND--ITESMLLAKI 171


>AJ001516-1|CAC79666.1|  550|Drosophila melanogaster env protein
           protein.
          Length = 550

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = -3

Query: 210 TSYNRIYYHIN--NLILLDVAVL--AVTNM*LYLNHVNSEKIVTQRLLSRI 70
           TS N+IY H+N  + +L ++  L     N+ L++NH+N   I    LL++I
Sbjct: 186 TSQNKIYKHLNLQDTLLEEIQYLNRINYNIELFINHLND--ITESMLLAKI 234


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,144,224
Number of Sequences: 53049
Number of extensions: 193191
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 943048980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)