Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_F20
(407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 237 4e-64
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 130 8e-32
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 113 1e-26
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 85 3e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 69 4e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 67 1e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 60 1e-10
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.069
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 29 0.37
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 28 0.64
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 3.4
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.5
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.0
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 6.0
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 24 7.9
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 24 7.9
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 24 7.9
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 24 7.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 7.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 7.9
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 21 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 237 bits (581), Expect = 4e-64
Identities = 103/114 (90%), Positives = 111/114 (97%)
Frame = +3
Query: 66 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 245
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 246 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 407
RGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+N
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN 115
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 130 bits (314), Expect = 8e-32
Identities = 59/108 (54%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Frame = +3
Query: 72 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 251
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 252 ILTLKYPIEHGIITNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 392
+L ++ PIE GII NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 68 LLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 113 bits (272), Expect = 1e-26
Identities = 52/112 (46%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Frame = +3
Query: 78 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 251
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 252 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 407
+L +KYP+E+GII ++++M ++W +TF+ +L++ P +LLTE P+NP AN
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVAN 115
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 85.4 bits (202), Expect = 3e-18
Identities = 50/132 (37%), Positives = 68/132 (51%), Gaps = 24/132 (18%)
Frame = +3
Query: 84 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 212
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 213 ------DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 371
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 372 LLTEAPLNPKAN 407
LLTE PLNP N
Sbjct: 127 LLTEPPLNPPEN 138
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 68.5 bits (160), Expect = 4e-13
Identities = 38/113 (33%), Positives = 60/113 (53%)
Frame = +3
Query: 69 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 248
D+V+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 249 GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 407
G + +K I +G + NWD +W + +L+ P EHP+L+TE NP N
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPEN 113
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.9 bits (156), Expect = 1e-12
Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Frame = +3
Query: 84 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 263
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 264 -KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 398
+ P E +I+NWD ME++ +TF +L + EHP+ +TE NP
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 60.1 bits (139), Expect = 1e-10
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Frame = +3
Query: 69 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 248
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 249 GI--LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 404
I + +K +GII +W+ W +L+V P E+ +++TE NP++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQS 115
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.069
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 129 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 272
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 28.7 bits (61), Expect = 0.37
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +3
Query: 84 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 263
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 264 KYPIEH--GIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTE 383
++ H G + +W +W N + P ++ +LLT+
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQ 101
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 27.9 bits (59), Expect = 0.64
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +1
Query: 16 RVNIHRVPTQKHTPKCATTMLLRS*LTMAPACAKPVSPV----TTRLAPSSRPSWVALAT 183
RVN+ P K PKC + LT++ + P++P+ T +L S P +
Sbjct: 11 RVNVFLDPETKDIPKCVADLKFPLPLTLSR--STPINPIIRSDTIQLVISCPPVTYSDEI 68
Query: 184 RVSWSAWD 207
+V W A D
Sbjct: 69 QVPWKAID 76
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 3.4
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = +3
Query: 270 PIEHGIITNWDDMEKIWHHTF 332
PI+ G + +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 189 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 275
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 6.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +3
Query: 96 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 248
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.6 bits (51), Expect = 6.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 233 LITDVRVLLSHADHDTLVARATHDGREDGARRVVTG 126
++TD R+LL + H T DG DGA V+TG
Sbjct: 85 IVTDARLLLCNMTHRGATGADTRDG--DGA-GVMTG 117
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 7.9
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 325 WCQIFS-MSSQLVMIPCSMGYFRVRIPLLL-WASSPT*ESFCPMPTMTPWW 179
WC+ S + SQ+ + +G F PL L WA S P +TPWW
Sbjct: 304 WCKPSSAVLSQIFGVKTGLGLF----PLTLDWAQI----SSLSNPLITPWW 346
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 7.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 70 TMLLRS*LTMAPACAKPVSPVTTRLAPSSRPSWVALATRVSWSAW 204
T+LL+S L +C+K T+ A S+ W+A + AW
Sbjct: 99 TILLKSCLGKYMSCSKSGDLYCTQEAVGSQEQWIAENLGSGFWAW 143
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.2 bits (50), Expect = 7.9
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +3
Query: 285 IITNWDDME-KIWH--HTFYNELRVAPEEHPVLLTEAPLNP 398
+I + DD +W+ HTF+++ + P EH + ++++ +NP
Sbjct: 271 VIGSADDRTLNVWNLRHTFHHKGKTRPPEHRI-VSQSIINP 310
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 24.2 bits (50), Expect = 7.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 267 YPIEHGIITNWDDMEKIWHHTFYNELRVAPE 359
YP G++ +W ++E + E+R+ P+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 172 RPTMDGKTARGASSPAKPALHMPEPL 95
RP+ DG+ A G A P++ P P+
Sbjct: 950 RPSNDGRKASGPRPAAPPSIPPPLPV 975
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 7.9
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 234 PHHRRKSPSVP 202
PHHR +SPS P
Sbjct: 125 PHHRERSPSPP 135
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.4 bits (43), Expect(2) = 10.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 252 ILTLKYPIEHGIITN 296
I+T YP HGI++N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 10.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 291 TNWDDMEKIWHHTFYNELRVAPEEHP 368
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,335
Number of Sequences: 5004
Number of extensions: 31770
Number of successful extensions: 97
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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