Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F19
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    84   7e-18
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   0.39 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   4.8  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   4.8  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   6.4  
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce...    24   8.5  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 84.2 bits (199), Expect = 7e-18
 Identities = 50/133 (37%), Positives = 65/133 (48%)
 Frame = +1

Query: 25  ASLPHVLRWYSHIASYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXX 204
           A  P+  RWY  IA+Y  A     ++ VS               +        LFGS   
Sbjct: 48  AKYPNGARWYKQIATYDLATLPGTAKEVSAYGPEGAAAAEEDEID--------LFGSDEE 99

Query: 205 XXXXXXXXXXXXXLKAYADKKSKKPALIAKSSIILDVRPWDDETDMKEMENQVRTIEMDG 384
                         + Y  KK+ KP  + KS + LDV+PWDDET M E+E  VR+I+MDG
Sbjct: 100 EDPEAERIKAERVAE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDG 158

Query: 385 LLWGASKLVPVGY 423
           L+WG SKLVPVG+
Sbjct: 159 LVWGLSKLVPVGF 171


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -1

Query: 379 PFQLCALGFPFLSYLSHHPMVL--HQGL*RTLQ 287
           P+QL  L + +L + +HHP +L    GL +T+Q
Sbjct: 558 PYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQ 590


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 119 VNGLTPSDQVLRSAGVYDAMWLYHLKT*GRLAAGTLPP 6
           V+G+T S+QV     V DAM  Y  ++   L  G  PP
Sbjct: 181 VSGITKSEQVQHPQAVLDAMAFYS-QSKKYLEEGAKPP 217


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 259 DKKSKKPALIAKSSIILDVRPWDDETDMKEME 354
           DK+S  P LIA++ +  ++   D+   +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 56  ATSHRTPLLNAKPGQRELAH*QLELNPRPLLHPP 157
           AT+  TP   A P   E  + +   +P P+  PP
Sbjct: 118 ATASNTPQNEASPAATEAVNHERPASPPPVYRPP 151


>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 214

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 391 IEGHPFQLCALGFPFLSYLSHHPMVLHQ 308
           I+ HP  L  L  P   YL  H  ++H+
Sbjct: 104 IQSHPNLLLYLSSPERQYLLRHQQIVHR 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,372
Number of Sequences: 5004
Number of extensions: 24134
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)