Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F19
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...    88   2e-18
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...    85   3e-17
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...    83   9e-17
07_03_1124 + 24157441-24157483,24157989-24158020,24158135-241583...    29   1.5  
01_03_0163 + 13346586-13347809                                         27   6.2  
11_06_0256 - 21727919-21728366,21728463-21728512                       27   8.2  

>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 50/135 (37%), Positives = 64/135 (47%)
 Frame = +1

Query: 19  PAASLPHVLRWYSHIASYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSG 198
           PAAS  +V RWY HI++   +   T +EG                               
Sbjct: 66  PAASYVNVTRWYDHISALLRSSGVT-AEGEGVKVESTACSVSPTADQKAPAADEEDDDDV 124

Query: 199 XXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSIILDVRPWDDETDMKEMENQVRTIEM 378
                           +A A K S K     KSS++LDV+PWDDETDM ++E  VR ++M
Sbjct: 125 DLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKM 184

Query: 379 DGLLWGASKLVPVGY 423
           +GLLWGASKLVPVGY
Sbjct: 185 EGLLWGASKLVPVGY 199


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 36/56 (64%), Positives = 45/56 (80%)
 Frame = +1

Query: 256 ADKKSKKPALIAKSSIILDVRPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGY 423
           A K S K     KSS++LDV+PWDDETDMK++E  VR+++M+GL WGASKLVPVGY
Sbjct: 123 ASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGY 178


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score = 83.0 bits (196), Expect = 9e-17
 Identities = 37/59 (62%), Positives = 46/59 (77%)
 Frame = +1

Query: 247 KAYADKKSKKPALIAKSSIILDVRPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGY 423
           +A A K S K     KSS++LDV+PWDDETDM ++E  VR ++M+GLLWGASKLVPVGY
Sbjct: 125 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGY 183


>07_03_1124 +
           24157441-24157483,24157989-24158020,24158135-24158353,
           24158553-24158634,24158726-24158898
          Length = 182

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 98  DQVLRSAGVYDAMWLYHLKT*GRLAAGTLPPR 3
           DQ L  A   +A WL  L+  GRL    LPPR
Sbjct: 119 DQSLNDAEAIEAGWLDCLRVVGRLYVRALPPR 150


>01_03_0163 + 13346586-13347809
          Length = 407

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 319 PWDDETDMKEMENQVRTIEMDGLLWGA 399
           PWDD    + M      + MDG LW A
Sbjct: 220 PWDDTFQPQVMRTGDHFVPMDGYLWQA 246


>11_06_0256 - 21727919-21728366,21728463-21728512
          Length = 165

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 344 KKWKTKCAQLKWMAFYGEHQSLSL 415
           KKWK+  AQ+KW      H SL +
Sbjct: 33  KKWKSLLAQVKWWYNTNFHTSLGM 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,777,823
Number of Sequences: 37544
Number of extensions: 178180
Number of successful extensions: 303
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)