Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F19
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   125   1e-29
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...    95   1e-20
Z34799-1|CAA84315.1|  147|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z78541-3|CAD44120.1|  733|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z70269-4|CAA94223.2|  733|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z70269-1|CAD44161.1|  770|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical...    26   9.7  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  125 bits (302), Expect = 1e-29
 Identities = 64/141 (45%), Positives = 81/141 (57%)
 Frame = +1

Query: 1   ARGGKVPAASLPHVLRWYSHIASYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXX 180
           A G    A++ P+V RWY+++ASYT AERKTW+                           
Sbjct: 39  ALGSAPNASTYPNVARWYANVASYTDAERKTWASAGGSAPAAAAADGDDFD--------- 89

Query: 181 XLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSIILDVRPWDDETDMKEMENQ 360
            LFGS                L AYA+KK+KK   IAKSS+ILDV+PWDDETD+ EME  
Sbjct: 90  -LFGSDDEEEDAEKAKIVEERLAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKL 148

Query: 361 VRTIEMDGLLWGASKLVPVGY 423
           VR+IEMDGL+WG +KL+P+GY
Sbjct: 149 VRSIEMDGLVWGGAKLIPIGY 169


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score = 95.5 bits (227), Expect = 1e-20
 Identities = 45/80 (56%), Positives = 54/80 (67%)
 Frame = +1

Query: 184 LFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSIILDVRPWDDETDMKEMENQV 363
           LFGS                L AYA KK+ K   IAKSS+ILDV+PWDDETD+ EME  V
Sbjct: 140 LFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKLV 199

Query: 364 RTIEMDGLLWGASKLVPVGY 423
           R+IEMDGL+WG +KL+P+GY
Sbjct: 200 RSIEMDGLVWGGAKLIPIGY 219


>Z34799-1|CAA84315.1|  147|Caenorhabditis elegans Hypothetical
           protein F34D10.3 protein.
          Length = 147

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 294 LCNKSGFLRLFVSICLKTFFTDSGCFCILF 205
           L N SG  + ++ +CL  F TD+ CF +LF
Sbjct: 27  LDNSSGD-KQYIFLCLIVFATDAACFGVLF 55


>Z78541-3|CAD44120.1|  733|Caenorhabditis elegans Hypothetical
           protein ZK1086.1a protein.
          Length = 733

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +1

Query: 310 DVRPWDDETDMKEMENQ--VRTI 372
           D RPWD+  D++++EN   V+TI
Sbjct: 601 DYRPWDNNNDIQQIENNYVVKTI 623


>Z70269-4|CAA94223.2|  733|Caenorhabditis elegans Hypothetical
           protein ZK1086.1a protein.
          Length = 733

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +1

Query: 310 DVRPWDDETDMKEMENQ--VRTI 372
           D RPWD+  D++++EN   V+TI
Sbjct: 601 DYRPWDNNNDIQQIENNYVVKTI 623


>Z70269-1|CAD44161.1|  770|Caenorhabditis elegans Hypothetical
           protein ZK1086.1b protein.
          Length = 770

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +1

Query: 310 DVRPWDDETDMKEMENQ--VRTI 372
           D RPWD+  D++++EN   V+TI
Sbjct: 638 DYRPWDNNNDIQQIENNYVVKTI 660


>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
           protein Y57A10A.31 protein.
          Length = 1048

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 247 KAYADKKSKKPALIAKSSIILDVR-PWDDETDMKE 348
           K    ++S+K   + + + ++D R PWDDE   KE
Sbjct: 3   KGKKQRRSEKIIPLTQLAFVVDSRDPWDDEPPSKE 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,723,072
Number of Sequences: 27780
Number of extensions: 145295
Number of successful extensions: 319
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)