Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F17
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    48   8e-07
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    33   0.019
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    28   0.55 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   0.97 
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    27   1.3  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.0  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   3.9  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    25   5.2  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   5.2  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    25   6.8  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   6.8  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 47.6 bits (108), Expect = 8e-07
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
 Frame = +3

Query: 72  MIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIRTQDXSTLMD*PLGGRLTKGRIPT 251
           M++YKDVI+GDE+ SD Y +K +D+++YE   + V   Q          GG +  G  P+
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQ----------GGDVDIGANPS 50

Query: 252 WRLV*TXVPEVPETRLVETYAFG------DKKSLYIGTSKTT*KN**QKLEEKAPDQVEI 413
                    E  ET     Y+F       DKKS Y+   K   K    +L+E  P++V +
Sbjct: 51  AEDAEENAEEGTETVNNLVYSFRLSPTSFDKKS-YMSYIKGYMKAIKARLQESNPERVPV 109

Query: 414 FKTN 425
           F+ N
Sbjct: 110 FEKN 113


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 33.1 bits (72), Expect = 0.019
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -3

Query: 218 EGSIHQCGXVLCSDHGLAGDFINNFVDQLNSIRIREHLVTSYNILIDYHFDGLE 57
           E S  +   V+C D GL+G+F        +SIR +  +   Y  LI Y FDG E
Sbjct: 279 ESSAEEFATVMCLDLGLSGEFCTAVA---HSIREQCQMYIKYLSLIGYLFDGSE 329


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +3

Query: 24  SRSFGFIILNRLQSIKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIR 182
           SR+  + I  +L    +++YK  +    M  DT++    ++ +YE++G   +R
Sbjct: 118 SRNLLYSIAEKLGLSSIVVYKAELITSSMLLDTFQTMESNQEMYELSGTRKMR 170


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 238 PFVSLPPRGQSINVXSSCVLITVLPVTS*ITSSINLTLYVSENISSPVITS 86
           P+ S P    +  + SS   +T  PVT+   ++    LY S  I+SP  TS
Sbjct: 562 PYTSTPVTSSNYTISSSTP-VTSTPVTTTNCTTSTSVLYTSTPITSPNSTS 611


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 239 SLRQPPAEGSIHQCGXVLCSDHGLAGDFINNFVDQLNSIRIREHLVTSYNILIDYHF 69
           SL    A+G I Q   ++ S  G     +N     L S+ +REH     ++L +  F
Sbjct: 403 SLIDMAAQGLIGQKTGIVSSSEGQVRQILNTTQTVLRSLALREHKEADTSVLDESEF 459


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 45  ILNRLQSIKMIIYKDVITGDEMFSDTYRVKLID 143
           ILN++    M IY   IT D   SDTY +   D
Sbjct: 30  ILNKIFHPCMYIYSRGITNDTYSSDTYELDWYD 62


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 440 HYFVHVRLEYLNLVRCFFFQFLLLIFSCSL*GTNV 336
           +Y    R+++  LVR  F  +   I+ C++ GTN+
Sbjct: 700 YYHAKQRIDFRELVRDLFKVYKTRIWMCAVSGTNM 734


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 304 KRMHLAIRNPYTLVPQRLHEKISSKNWKKK 393
           K++++A+R    + PQ  + +   KNWKKK
Sbjct: 101 KQLNIAMR---PIFPQHRYTEQDKKNWKKK 127


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 191  VLCSDHGLAGDFINNFVDQLNSIRIREHLVT--SYNILIDYHFDG 63
            ++ S+  L  D  +   ++L SIR ++  +   +Y I+ DY FDG
Sbjct: 885  IINSNGKLPHDVRHQATEKLESIRKQDVAIAHNAYYIITDYDFDG 929


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 9  VLGARSRSFGFIILNRLQS 65
          + G  + SF F++LNRLQ+
Sbjct: 15 IAGVATFSFAFLVLNRLQA 33


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 188 LCSDHGLAGDFINNFVDQLNSIRIREHLVTSYNILI 81
           L +D   +G  + N   QLNS+   E  +T Y+ L+
Sbjct: 91  LNTDIQASGRDLQNMKQQLNSLSTSERFLTKYHNLV 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,594
Number of Sequences: 5004
Number of extensions: 36577
Number of successful extensions: 90
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)