Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F17
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    40   0.001
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420...    28   2.9  
11_06_0024 - 19331250-19331380,19331412-19331484,19331571-193317...    28   2.9  
01_01_1143 - 9064210-9065682                                           28   2.9  
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352...    28   3.8  
03_01_0180 + 1456182-1456359,1456444-1456520,1456570-1456692,145...    28   3.8  
01_01_0101 - 766382-767487,767599-767756,767900-768615                 28   3.8  
08_01_0291 - 2337777-2338343                                           27   6.7  
10_01_0108 + 1337009-1338190                                           27   8.8  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/38 (39%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
 Frame = +3

Query: 72  MIIYKDVITGDEMFSDTYRVKLIDE-VIYEVTGKTVIR 182
           M++Y+D++TGDE+ SD++  + I+  +++EV GK V++
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQ 38


>11_06_0025 -
           19341127-19341339,19341426-19341620,19341912-19342088,
           19342505-19342672,19343533-19343574,19344129-19344214,
           19345218-19345545
          Length = 402

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 63  SIKMIIYKDVITGDEMFSDTYRVKLIDE 146
           + K+I  + +   DEMFSD  R KL+D+
Sbjct: 318 AFKIICSRKIDKSDEMFSDDVRSKLLDD 345


>11_06_0024 -
           19331250-19331380,19331412-19331484,19331571-19331768,
           19333317-19333484,19334187-19334263,19335321-19335423
          Length = 249

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 63  SIKMIIYKDVITGDEMFSDTYRVKLIDE 146
           + K+I  + +   DEMFSD  R KL+D+
Sbjct: 168 AFKIICSRKIDKSDEMFSDDVRSKLLDD 195


>01_01_1143 - 9064210-9065682
          Length = 490

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 270 MSTPVSTLESVPSSASRRGVNPSM 199
           M +PVS+L S+P  A   GVNP++
Sbjct: 389 MPSPVSSLTSLPGVAGGPGVNPAL 412


>11_01_0456 +
           3522599-3523921,3524005-3524027,3524097-3525265,
           3525373-3525737
          Length = 959

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = -3

Query: 227 PPAEGSIHQCGXVLCSDHGLAG---DFINNFVDQLNSIRIR-EHLVTSYNILIDYHFDGL 60
           P + G +H    +  S++ L G   DF N+    L  + +   HL+  +N     H  GL
Sbjct: 115 PLSLGHLHHLQNLYLSNNTLQGKIPDFTNS--SNLKVLLLNGNHLIGQFNNNFPPHLQGL 172

Query: 59  EAI*NNKTETTASSPKN 9
           +   NN T T  SS  N
Sbjct: 173 DLSFNNLTGTIPSSLAN 189


>03_01_0180 +
           1456182-1456359,1456444-1456520,1456570-1456692,
           1456783-1456896,1457580-1457666,1458040-1458179,
           1458253-1458340,1459125-1459198,1461147-1461340,
           1461430-1461632,1461955-1462001,1462084-1462336,
           1462551-1462568
          Length = 531

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 137 DRRSY-L*SHRQDRDQNTRRXHIDGLTPRREADEGT-DSNVETGVDI 271
           DR  Y   S R D   N R  H DGL+P R +  G+  SN+E   ++
Sbjct: 335 DRSDYKTNSDRSDYKINHRDAHADGLSPSRVSIAGSRRSNIEKNGEV 381


>01_01_0101 - 766382-767487,767599-767756,767900-768615
          Length = 659

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 290 FGNFRDXCLHQSPRWNPSLRQPPAEGSIH 204
           F + R  CL   PRWNP LR P  +   H
Sbjct: 95  FLDSRSSCL--LPRWNPLLRDPRLQAKSH 121


>08_01_0291 - 2337777-2338343
          Length = 188

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
 Frame = -3

Query: 212 SIHQCGXVL-----CSDHGLAGDFINNFVDQLN 129
           ++H  G V+     CS  GLAGD++N  +D  N
Sbjct: 120 ALHAMGSVVDKLDGCSFDGLAGDYLNGLIDVEN 152


>10_01_0108 + 1337009-1338190
          Length = 393

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 66  IKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIR 182
           I +   + +    E ++D Y+ +L+D  I E+  K V++
Sbjct: 131 IGLTFIRSIHLSSEAYNDAYKFRLLDSCIDEIGEKNVVQ 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,025
Number of Sequences: 37544
Number of extensions: 228445
Number of successful extensions: 482
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)