Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F17
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...    51   4e-07
Z83119-6|CAB05580.2|  591|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z81111-4|CAB03264.1|  415|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AL110494-2|CAC14398.1|  591|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z29645-1|CAA82753.1|  522|Caenorhabditis elegans kinesin light c...    27   8.0  
Z29644-1|CAA82752.1|  540|Caenorhabditis elegans kinesin light c...    27   8.0  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 19/39 (48%), Positives = 31/39 (79%)
 Frame = +3

Query: 72  MIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIRTQ 188
           M+IYKD+ T DE+ SD++ +KL+D+++YE  GK V+R +
Sbjct: 1   MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKE 39


>Z83119-6|CAB05580.2|  591|Caenorhabditis elegans Hypothetical
           protein R05H10.3a protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 42  IILNRLQSIKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIR 182
           ++L RL SI   +Y ++      F DT   KL+D + +E T  TV+R
Sbjct: 3   LLLERLVSI-CSVYDEL---PHSFDDTLIDKLVDSIQFEETSLTVVR 45


>Z81111-4|CAB03264.1|  415|Caenorhabditis elegans Hypothetical
           protein T01G5.4 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 170 LAGDFINNFVDQLNSIRIREHLVTSYNILIDYH 72
           LA   I NF+    +  ++EHL TS  ILI+++
Sbjct: 314 LAAIIIYNFIILSTACALQEHLATSTRILINHY 346


>AL110494-2|CAC14398.1|  591|Caenorhabditis elegans Hypothetical
           protein R05H10.3a protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 42  IILNRLQSIKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIR 182
           ++L RL SI   +Y ++      F DT   KL+D + +E T  TV+R
Sbjct: 3   LLLERLVSI-CSVYDEL---PHSFDDTLIDKLVDSIQFEETSLTVVR 45


>Z29645-1|CAA82753.1|  522|Caenorhabditis elegans kinesin light
           chain (isoform 2) protein.
          Length = 522

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 197 HIDGLTPRREADEGTDSNVETGVDIXP 277
           H+  +   ++ D+GT S+ +T VD+ P
Sbjct: 152 HLKYMASIKQLDDGTQSDTKTSVDVGP 178


>Z29644-1|CAA82752.1|  540|Caenorhabditis elegans kinesin light
           chain (isoform 1) protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 197 HIDGLTPRREADEGTDSNVETGVDIXP 277
           H+  +   ++ D+GT S+ +T VD+ P
Sbjct: 131 HLKYMASIKQLDDGTQSDTKTSVDVGP 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,025,859
Number of Sequences: 27780
Number of extensions: 199721
Number of successful extensions: 461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)