Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F15
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    25   1.2  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    25   2.0  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    24   2.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    23   4.7  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    23   4.7  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    23   6.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    23   6.2  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    23   6.2  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    23   6.2  
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    23   6.2  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    23   8.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    23   8.2  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    23   8.2  

>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 204 DS*RSISIITPNGEDTTFLSFPDVYASLRSF 112
           D+ R ++ +T  G+    LS  D  ASLRSF
Sbjct: 154 DTFREVTFLTELGQQEDLLSSRDGEASLRSF 184


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 153 FLSFPDVYASLR-SFIEVLSMASPKAVLLYSWSKK*NARTLQTAITANK 10
           + SFP + AS+  +F+ ++ +  P  V +Y+W+       LQ +  +NK
Sbjct: 156 YSSFPLMIASIVCAFVPLIFIRIPVIVAMYAWTLFAAMGVLQNSNLSNK 204


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 2   HEDLFAVIAVCNVRAFYFFDHE 67
           +++ F  IAVC   +F F DHE
Sbjct: 188 YDEGFTSIAVCLAHSFTFPDHE 209


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 98  DKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYESGAGE 217
           D +S+    +       +N++   +GV   +LL  SG+GE
Sbjct: 535 DNSSISCAFQTNVPSLPRNIILEGVGVDRNLLLVSSGSGE 574


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 224 DYLHRRLIRREALASSRLMVKTQHSCPSQMYML 126
           +YL +R+     L+  +L  K  H+CPS   +L
Sbjct: 17  NYLLKRVCLSLKLSPCKLTRKFHHACPSSSKVL 49


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 41  RAFYFFDHEYNRTAL 85
           + F +F H Y RTAL
Sbjct: 237 KMFEYFSHNYGRTAL 251


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 171 NGEDTTFLSFPDVYASLRSFIEVLSMASPKAVLLYSWSKK*NART-LQTAITANKSS 4
           N +DT+ L  PD+ +S  S  E L    P+   L+S +   N+ T  Q + T +K S
Sbjct: 433 NNKDTSKLENPDISSSPLSPTEDLFPNDPEEENLFSAALGLNSNTGSQPSETQSKPS 489


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 171 NGEDTTFLSFPDVYASLRSFIEVLSMASPKAVLLYSW 61
           NG+ T F+S  +V  S + F +VL      + L Y++
Sbjct: 418 NGKHTHFISDDEVRTSWKIFDDVLDTTGDLSPLPYAF 454


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +2

Query: 41  RAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLM 190
           + FY   +E N T L  +     +      Y   KDK++   P   ++LM
Sbjct: 158 KGFYISPNERNFTRLCRSASSVHISYQNGLYCIDKDKSLTKEPSVNIILM 207


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 127 FLKEFHRGFINGVT*GCPVVLV 62
           +LK+ HR F NG   G P   V
Sbjct: 66  YLKKVHRSFKNGFRSGKPAAAV 87


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 251 HPPLRRSPHDYLHRRL 204
           HP   R+P +++H RL
Sbjct: 218 HPSQTRAPEEFVHMRL 233


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 60  SKK*NARTLQTAITANKSS 4
           SKK   RT++T+IT NKS+
Sbjct: 196 SKK-RKRTIETSITQNKSA 213


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 165 EDTTFLSFPDVYASLRSFIEV 103
           E T +L FP +Y+S+  F+ V
Sbjct: 202 EYTPWLEFPLLYSSIGKFVRV 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 943,398
Number of Sequences: 5004
Number of extensions: 15343
Number of successful extensions: 48
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)