Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F15
         (253 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin re...    26   4.1  
AC006713-4|AAK68404.1|  321|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z68121-1|CAA92204.2|  174|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U21317-1|AAA62524.2|  627|Caenorhabditis elegans Na/h exchanger ...    25   5.4  
AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H...    25   5.4  
AF302237-1|AAG21385.1|  174|Caenorhabditis elegans GATA-type tra...    25   5.4  
Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    25   7.1  
U00044-5|AAK93857.1|  174|Caenorhabditis elegans Mesoderm and en...    25   7.1  
AF302238-1|AAG21386.1|  174|Caenorhabditis elegans GATA-type tra...    25   7.1  
AL590342-2|CAC35859.3|  685|Caenorhabditis elegans Hypothetical ...    25   9.4  
AL032622-4|CAA21499.1|  738|Caenorhabditis elegans Y66A7A.5 prot...    25   9.4  

>AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin
           related protein 2 protein.
          Length = 654

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 120 RSFIEVLSMASPKAVLLYSWSKK*NARTLQTAITANKSSC 1
           R+ +  +S++S   +  Y W+    ART   AI+   +SC
Sbjct: 62  RNHVYNISISSMLEIARYEWTSSDEARTNCAAISQTPASC 101


>AC006713-4|AAK68404.1|  321|Caenorhabditis elegans Hypothetical
           protein Y119D3A.1 protein.
          Length = 321

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 23/73 (31%), Positives = 33/73 (45%)
 Frame = +2

Query: 29  VCNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYESG 208
           VC VR+   F+  Y +TAL D I   +     E Y S  +K   S+ LG  +      +G
Sbjct: 84  VCRVRSTKTFEGNYLQTALND-IKMIAKNNATELYFSSLEK---SNKLGASLYEDSENAG 139

Query: 209 AGEGSRVESDEVE 247
           A E   + S  +E
Sbjct: 140 A-EEMNISSGTIE 151


>Z68121-1|CAA92204.2|  174|Caenorhabditis elegans Hypothetical
           protein T24D3.1 protein.
          Length = 174

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 32  CNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKD 148
           CN  A + +  +YN+T    A++K   + LK   T+G D
Sbjct: 136 CN--ACFIYQRKYNKTRPVTAVNKYQKRKLKVQETNGVD 172


>U21317-1|AAA62524.2|  627|Caenorhabditis elegans Na/h exchanger
           protein 2 protein.
          Length = 627

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 141 PDVYASLRSFIEVLSMASPKAVLLY 67
           PD   +  SFI+VLS+AS   + ++
Sbjct: 308 PDTVKATESFIKVLSLASETVIFVF 332


>AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H
           exchanger isoform 2 protein.
          Length = 644

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 141 PDVYASLRSFIEVLSMASPKAVLLY 67
           PD   +  SFI+VLS+AS   + ++
Sbjct: 325 PDTVKATESFIKVLSLASETVIFVF 349


>AF302237-1|AAG21385.1|  174|Caenorhabditis elegans GATA-type
           transcription factor protein.
          Length = 174

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 32  CNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKD 148
           CN  A + +  +YN+T    A++K   + LK   T+G D
Sbjct: 136 CN--ACFIYQRKYNKTRPVTAVNKYQKRKLKVQETNGVD 172


>Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical
           protein Y48E1B.4 protein.
          Length = 611

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 119 LKEAYTSGKDKNVVSSPLG 175
           LK A++SG  + VVS+P+G
Sbjct: 388 LKHAFSSGTHRMVVSNPVG 406


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 171  NGEDTTFLSFPDVYASLRSFIEVLSMAS 88
            NG DT+ +S   VY+S  + +E   M S
Sbjct: 1035 NGSDTSSISSDSVYSSFNAMLENKPMTS 1062


>U00044-5|AAK93857.1|  174|Caenorhabditis elegans Mesoderm and
           endoderm determinationprotein 2 protein.
          Length = 174

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 32  CNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKN 154
           CN  A + +  +YN T    A++K   + LK   T+G D +
Sbjct: 136 CN--ACFIYQRKYNETRPVTAVNKYQKRKLKVQETNGVDSS 174


>AF302238-1|AAG21386.1|  174|Caenorhabditis elegans GATA-type
           transcription factor protein.
          Length = 174

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 32  CNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKN 154
           CN  A + +  +YN T    A++K   + LK   T+G D +
Sbjct: 136 CN--ACFIYQRKYNETRPVTAVNKYQKRKLKVQETNGVDSS 174


>AL590342-2|CAC35859.3|  685|Caenorhabditis elegans Hypothetical
           protein Y66A7A.5 protein.
          Length = 685

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 50  YFFDHEYNRTALGDAIDKTSMKL 118
           YF DH Y  T   D   K SMKL
Sbjct: 93  YFRDHGYFETQKSDVNRKKSMKL 115


>AL032622-4|CAA21499.1|  738|Caenorhabditis elegans Y66A7A.5
           protein.
          Length = 738

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 50  YFFDHEYNRTALGDAIDKTSMKL 118
           YF DH Y  T   D   K SMKL
Sbjct: 93  YFRDHGYFETQKSDVNRKKSMKL 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,270,135
Number of Sequences: 27780
Number of extensions: 86496
Number of successful extensions: 219
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)