Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_F14
(316 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 30 0.072
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 26 1.2
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 1.5
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|... 25 2.0
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 25 2.0
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 3.6
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 24 4.7
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 23 8.3
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 23 8.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 23 8.3
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 23 8.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 23 8.3
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 23 8.3
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 23 8.3
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 23 8.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 23 8.3
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 23 8.3
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 23 8.3
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 30.3 bits (65), Expect = 0.072
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +2
Query: 134 KRNLLLIFVKVKQNLYLTGVRQVRNKSLYAKTKRNRDLRVIAILSDSLS 280
KR LL I +KV + Y GV +RN L AKT +R+ R++++++ L+
Sbjct: 638 KRELLSIEIKVTRENYEKGVYWIRN--LLAKTVWDRE-RMLSVINQQLA 683
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 26.2 bits (55), Expect = 1.2
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 203 RNKSLYAKTKRNRDLRVIAILSDSLSRAESELIT-KQRE 316
R KSL +NRD A D L +AES+L+ K RE
Sbjct: 52 RKKSLMIHPDKNRDNPKAADAFDILKKAESDLVNDKIRE 90
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 1.5
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +2
Query: 209 KSLYAKTKRN-----RDLRVIAILSDSLSRAESELITKQR 313
KS A+ +RN +DL A ++SLSR SELIT R
Sbjct: 329 KSSNAEVRRNCFQTFKDLSANASDNESLSRVASELITSLR 368
>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.4 bits (53), Expect = 2.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 123 AHDE*GRKYLFCNITHLNPYRHKDYL 46
AHDE GRK + C + + +P + YL
Sbjct: 88 AHDEAGRKKVRCKLVNCSPNTLRLYL 113
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 2.0
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +2
Query: 80 VILQNKYFLPYSSWATVPKRNLLLIFVKVKQNLYLTGVRQVRNKSLYAKTKRNRDLRV 253
+I N L SW +VP + L+ K+ Q+L L +++ + ++ + +R ++V
Sbjct: 254 IIQNNLSLLEEDSWTSVPIQGELVELNKLLQHLQLLQNQRITSHNVLSDEERQISVQV 311
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 24.6 bits (51), Expect = 3.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 182 DRDSVLLSQKSTIDFSLVL*PMTNK 108
D DS+L KS++ L P+TNK
Sbjct: 293 DNDSMLGENKSSVSTETALKPVTNK 317
>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 429
Score = 24.2 bits (50), Expect = 4.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 85 YYTPESVQAQRLLEALHNTIRRLY 14
+YTP A LEA N+I R+Y
Sbjct: 315 HYTPNFKGALAYLEAYQNSIGRIY 338
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 87 NITHLNPYRHKDYLRHYT-TQSDVCT 13
+++HL YRH L + T +SD+ T
Sbjct: 1250 HVSHLEKYRHNSELNYATIDESDIGT 1275
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 87 NITHLNPYRHKDYLRHYT-TQSDVCT 13
+++HL YRH L + T +SD+ T
Sbjct: 1250 HVSHLEKYRHNSELNYATIDESDIGT 1275
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 87 NITHLNPYRHKDYLRHYT-TQSDVCT 13
+++HL YRH L + T +SD+ T
Sbjct: 1250 HVSHLEKYRHNSELNYATIDESDIGT 1275
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 87 NITHLNPYRHKDYLRHYT-TQSDVCT 13
+++HL YRH L + T +SD+ T
Sbjct: 1250 HVSHLEKYRHNSELNYATIDESDIGT 1275
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 87 NITHLNPYRHKDYLRHYT-TQSDVCT 13
+++HL YRH L + T +SD+ T
Sbjct: 1250 HVSHLEKYRHNSELNYATIDESDIGT 1275
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 87 NITHLNPYRHKDYLRHYT-TQSDVCT 13
+++HL YRH L + T +SD+ T
Sbjct: 1250 HVSHLEKYRHNSELNYATIDESDIGT 1275
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 87 NITHLNPYRHKDYLRHYT-TQSDVCT 13
+++HL YRH L + T +SD+ T
Sbjct: 1250 HVSHLEKYRHNSELNYATIDESDIGT 1275
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 87 NITHLNPYRHKDYLRHYT-TQSDVCT 13
+++HL YRH L + T +SD+ T
Sbjct: 1250 HVSHLEKYRHNSELNYATIDESDIGT 1275
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 87 NITHLNPYRHKDYLRHYT-TQSDVCT 13
+++HL YRH L + T +SD+ T
Sbjct: 1250 HVSHLEKYRHNSELNYATIDESDIGT 1275
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 87 NITHLNPYRHKDYLRHYT-TQSDVCT 13
+++HL YRH L + T +SD+ T
Sbjct: 1250 HVSHLEKYRHNSELNYATIDESDIGT 1275
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 87 NITHLNPYRHKDYLRHYT-TQSDVCT 13
+++HL YRH L + T +SD+ T
Sbjct: 1250 HVSHLEKYRHNSELNYATIDESDIGT 1275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,836
Number of Sequences: 5004
Number of extensions: 21855
Number of successful extensions: 70
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -