Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F14
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0594 - 4413016-4413091,4413201-4413268,4413387-4413482,441...    29   0.58 
09_03_0205 - 13483981-13484291,13484402-13484531,13484742-13484939     29   1.0  
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488...    28   1.3  
11_06_0469 + 23957225-23957896                                         27   3.1  
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428...    25   9.4  
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90...    25   9.4  
01_06_1373 - 36729498-36729950,36730024-36730306,36730592-36730605     25   9.4  

>02_01_0594 -
           4413016-4413091,4413201-4413268,4413387-4413482,
           4413600-4413689,4413760-4413886,4413983-4414038,
           4414203-4414379,4414464-4415057
          Length = 427

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
 Frame = +2

Query: 107 PYSSWATVPKRNLL------------LIFVKVKQNLYLTGVRQVRNKSLYAKTKRNRDLR 250
           P SSWAT+P R LL             I  K        G R V   SLY    + R  R
Sbjct: 147 PASSWATLPNRALLCRPLPLDVGRCTCIIAKETLAAAAAGARGVALYSLYTNEGQGRQDR 206

Query: 251 VIAILSDSLSRAESELITKQ 310
            +A+      R  SE +  Q
Sbjct: 207 KLAVARHRRRRGRSEFVVAQ 226


>09_03_0205 - 13483981-13484291,13484402-13484531,13484742-13484939
          Length = 212

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 86  LQNKYFLP-YSSWATVPKR-NLLLIFVKVKQNLY 181
           +QNK FLP    W   PK  +L L+FV VKQ+LY
Sbjct: 174 MQNKVFLPKLYEW---PKTIHLTLLFVMVKQHLY 204


>03_05_0890 - 28547462-28547545,28548451-28548528,28548641-28548814,
            28548902-28548958,28549065-28549116,28549907-28549995,
            28550259-28550344,28550427-28550637,28551790-28551882,
            28551958-28552098,28552175-28552267,28553879-28554113,
            28554263-28554435,28555234-28556571,28556668-28556853,
            28557625-28557713,28557756-28557905,28557951-28558596
          Length = 1324

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 228  VLA*RDLFLTWRTPVR*RFCFTFTKINNRFL 136
            +LA RD+ +T R P   RF ++FT   N +L
Sbjct: 955  ILAERDILITVRNPFVVRFFYSFTSRENLYL 985


>11_06_0469 + 23957225-23957896
          Length = 223

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 72  NPYRHKDYLRHYTTQSDVCTAPSC 1
           NPY H+  +RH T +S  C   SC
Sbjct: 107 NPYNHRKIIRH-TFRSASCNVSSC 129


>12_02_1155 +
           26541137-26541142,26541244-26542623,26542730-26542852,
           26542996-26543168,26543332-26543572,26543931-26544023,
           26544092-26544232,26544358-26544450,26544633-26544837,
           26544993-26545078,26545532-26545620,26545736-26545820,
           26545898-26545954,26546319-26546399,26547130-26547321
          Length = 1014

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 228 VLA*RDLFLTWRTPVR*RFCFTFTKINNRFL 136
           +LA RD+ ++ R P   RF ++FT   N +L
Sbjct: 657 ILAERDILISARNPFVVRFFYSFTCRENLYL 687


>12_01_0119 +
           905916-907277,907737-907774,908269-908492,909411-909637,
           909733-909980,910275-910557,910707-911135
          Length = 936

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 89  QNKYFLPYSSWATVPKRNLL-LIFVKVKQNLYLTGVRQVRNKSLYAKTKRNRDLR 250
           QN    P  S A     N+L L  VK+++ L   G+R  +   LY  TK  + +R
Sbjct: 458 QNSTQCPVESLALFYLCNILWLRAVKIRKKLRRQGIRGPKPTFLYGNTKEIKRIR 512


>01_06_1373 - 36729498-36729950,36730024-36730306,36730592-36730605
          Length = 249

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +2

Query: 110 YSSWATVPKRNLLLIFVKVKQNLYLTGVRQVRNKSLYAKTKRNRDLRVIAILSDSLSRA 286
           + S   V  RN   + VK    L    V+ +  +S  +KT+ N  L ++AIL  +++ A
Sbjct: 146 FKSLGKVKPRNKKKLTVKPIPKLEAQKVKDIAKESAGSKTRMNIYLGLMAILGLTIANA 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,212,793
Number of Sequences: 37544
Number of extensions: 119095
Number of successful extensions: 256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)