Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F14
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-4|AAB00624.1|  751|Caenorhabditis elegans Phospholipase c...    28   1.6  
AF016434-1|AAB65875.2|  313|Caenorhabditis elegans Serpentine re...    26   5.0  
Z70207-4|CAA94133.1|  337|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U41015-11|AAM54187.1|  740|Caenorhabditis elegans Homeodomain in...    26   6.6  
U41015-10|AAA82316.1|  821|Caenorhabditis elegans Homeodomain in...    26   6.6  
U41015-9|AAM54186.1|  846|Caenorhabditis elegans Homeodomain int...    26   6.6  
AC024824-6|AAK85504.2|  567|Caenorhabditis elegans Hypothetical ...    25   8.7  

>U58746-4|AAB00624.1|  751|Caenorhabditis elegans Phospholipase c
           protein 4 protein.
          Length = 751

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 311 FVSLSVHFLLGLASHSKWRLLSSHGFSLSWHKGIYF*LGEPQL 183
           +VS+ +  +    + +K R++  +GF+  W    YF L  P+L
Sbjct: 647 YVSVQIFGIPRDETKAKTRIIKDNGFNPEWRDNFYFTLSCPEL 689


>AF016434-1|AAB65875.2|  313|Caenorhabditis elegans Serpentine
           receptor, class sx protein17 protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 128 VPKRNLLLIFVKVKQNLYLTGVRQVRNKSLYAK 226
           + K N+LL      QN ++TG+R  R    YA+
Sbjct: 255 IQKYNILLSLPTFCQNFFVTGLRSPRYAKAYAE 287


>Z70207-4|CAA94133.1|  337|Caenorhabditis elegans Hypothetical
           protein F15A2.4 protein.
          Length = 337

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -1

Query: 307 FRYQFTFCSA*RVTQNGDYSQVTVSLCLGIKGFISNLANPS 185
           F Y++   +    T++G Y Q+ +S C+ +   I  + +P+
Sbjct: 127 FYYRYEMLTNNSFTRSGHYKQLVISYCVPLVFLICEVLSPN 167


>U41015-11|AAM54187.1|  740|Caenorhabditis elegans Homeodomain
           interacting proteinkinase protein 1, isoform c protein.
          Length = 740

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -2

Query: 108 GRKYLFCNITHLNPYRHKDYLRHYTTQSDVCTAP 7
           G +  F  +TH+N Y   +Y+     + ++C  P
Sbjct: 371 GLESKFVTMTHINGYNFANYVHEAHKRMEICRKP 404


>U41015-10|AAA82316.1|  821|Caenorhabditis elegans Homeodomain
           interacting proteinkinase protein 1, isoform a protein.
          Length = 821

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -2

Query: 108 GRKYLFCNITHLNPYRHKDYLRHYTTQSDVCTAP 7
           G +  F  +TH+N Y   +Y+     + ++C  P
Sbjct: 452 GLESKFVTMTHINGYNFANYVHEAHKRMEICRKP 485


>U41015-9|AAM54186.1|  846|Caenorhabditis elegans Homeodomain
           interacting proteinkinase protein 1, isoform b protein.
          Length = 846

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -2

Query: 108 GRKYLFCNITHLNPYRHKDYLRHYTTQSDVCTAP 7
           G +  F  +TH+N Y   +Y+     + ++C  P
Sbjct: 477 GLESKFVTMTHINGYNFANYVHEAHKRMEICRKP 510


>AC024824-6|AAK85504.2|  567|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.4 protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 92  NKYFLPYSSWATVPKRNLLLIFVKVKQNLYLTGVRQVRNKS 214
           N YF   S    + +R  +L + + + NLY T ++ VR  S
Sbjct: 391 NYYFTSRSEMERMIERKEMLEYGEFRDNLYGTALKSVRKAS 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,582,689
Number of Sequences: 27780
Number of extensions: 118292
Number of successful extensions: 281
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)