Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F12
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   1.6  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.0  
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    25   5.0  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   6.6  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    25   6.6  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    25   6.6  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   6.6  

>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  GLYCGKNEGGNSHYFCSLIGGRQLPSRQT*F 112
           G+ C +NEG NS +F +L    +   +QT F
Sbjct: 100 GMACTENEGNNSQFFITLGPTPEWNGKQTLF 130


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 298 HSPSPTFR-SVSLCSQL*LFMTQTLPKDFGFSPFLLAQ 188
           H   P F  + +L  QL +F   + PKD GFS  L +Q
Sbjct: 99  HPFYPVFEVNSNLYYQLLMFTNYSNPKDNGFSKLLFSQ 136


>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 263 QRYTAESRRWRVCWFRRNSPLLI*TTKPQWNLS 361
           ++ T +   +R CW +R+ PL   + K   NLS
Sbjct: 45  RKCTEQMEEFRKCWEKRHGPLPSISDKKNKNLS 77


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 313 PSEPAHSPSPTFRSVS 266
           P EP  SPSP F SV+
Sbjct: 35  PKEPTCSPSPAFYSVN 50


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 258 HSYNYS*HKRCQRTSVSLRSYWRRSVRTSRWYSRED 151
           H  +YS +   +R   S  SY RRS    R Y+R D
Sbjct: 218 HYDSYSSYDELERRRSSNESYSRRSELPRRDYNRHD 253


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 12  IDAVCIVEKMKAETLIIFAVLLVAVSCRPDKPDLKQLKAEAARK 143
           +DA+C       ETL   + + V  +C P  P  K LK E  +K
Sbjct: 142 VDAIC-------ETLSKDSAIKVFFACSPGNPTAKALKLEDIKK 178


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 195 WRRSVRTSRWYSREDTLSYVP 133
           W++ V    WY     LS+VP
Sbjct: 597 WQKKVERKLWYLTNSKLSFVP 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,078
Number of Sequences: 5004
Number of extensions: 35029
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)