Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_F09
(390 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 77 1e-15
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 31 0.048
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 1.8
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 25 3.1
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 3.1
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 4.1
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 24 7.2
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 24 7.2
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 24 7.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 7.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 24 9.5
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 24 9.5
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 77.0 bits (181), Expect = 1e-15
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Frame = +1
Query: 52 LKKAVKMLSRVAPGVCTQAVAVVN-HQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSA 228
L++ + SR+ P C V H + ATLK I RLKS+KNI+KIT+++K V+
Sbjct: 2 LRQTLTQASRMRP--CISVVGFRGFHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQ 59
Query: 229 AKYTRAERDLKAARPYGEGAVQFYERAEVVALEDDPKQLYVAMTSDRGLCGAVH 390
K TRA+R ++A+ Y + + ++ A A E+ K L VA +SD+GLCG +H
Sbjct: 60 TKLTRAQRAMEASNKYYRVSDEVFKEAGTKAPEEG-KTLMVACSSDKGLCGGIH 112
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 31.5 bits (68), Expect = 0.048
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +1
Query: 58 KAVKMLSRVAPGVCTQAVAVVNHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKY 237
K + LS C +AV + +N KAI I K VKNI T ++++
Sbjct: 1045 KRIYSLSADMVKACDEAVERLGADDTKNKQPRKAILIEFKGVKNINAETVTLRVKDLTHL 1104
Query: 238 TRAERDL 258
RA + L
Sbjct: 1105 HRAYKGL 1111
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 26.2 bits (55), Expect = 1.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 162 DGFKCGHIPVLLVVDHRHRLGAYTRCDTTQHFHGFFQ 52
D F + V + H + +++CD TQ FH F Q
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQ 290
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 3.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 86 HRVYAPKRWRWSTTSRTGIWPHLKPSPFVSSL*RIF 193
H+VY R W T G +P+LK + V L R+F
Sbjct: 281 HQVYP--RGNWVFTCLNGYYPYLKLTLLVGFLFRLF 314
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 175 KSVKNIQKITQSMKMVSAAKYTRAERDLK 261
+ VKN+Q S+K +SAA +TR +K
Sbjct: 958 QQVKNMQLELASLKQISAAFFTRIPLKIK 986
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 4.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 155 LSVAIFLFCWWLTTATAWVHTP 90
+S++I+ F +WLT +W+ P
Sbjct: 115 VSLSIWRFLYWLTFVLSWIILP 136
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 198 LLNILYRLETNGDGFKCGHIPVLLVVDHRHRLG 100
L N+ E + G GHIP L++ + RLG
Sbjct: 176 LSNLQTAKEISNHGRSTGHIPELIINNFSTRLG 208
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 325 EDDPKQLYVAMTSDRGLCGAVH 390
+ +P L VA+ SDR CG+++
Sbjct: 876 KQNPYDLLVALDSDRKACGSLY 897
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/22 (40%), Positives = 19/22 (86%)
Frame = +1
Query: 151 LKAISIRLKSVKNIQKITQSMK 216
L+AIS+RL++++ +++ QSM+
Sbjct: 86 LQAISLRLQTMRTSEQMMQSMR 107
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.2 bits (50), Expect = 7.2
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 148 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGA 288
T + IS RL +NI+++ Q + + +A + A+R K +P +GA
Sbjct: 549 TDQIISSRLVVFRNIRELQQQNQNLLSAVHELADRMEKDEKPDLDGA 595
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 23.8 bits (49), Expect = 9.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 83 SHRVYAPKRWRWST 124
+H+VY PK W ST
Sbjct: 2547 AHKVYHPKEWSLST 2560
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 23.8 bits (49), Expect = 9.5
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -2
Query: 134 FCWWLTTATAWVHTPGATRLNIFTAFFRRF*LKYTSRRNMSL 9
FC +L T W A +N ++F R L++ SL
Sbjct: 555 FCIFLAGVTEWAKGLDAAAINNSSSFLRHLFLRFDKSMTGSL 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,989
Number of Sequences: 5004
Number of extensions: 31207
Number of successful extensions: 80
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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