Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_F09
(390 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0571 - 19602755-19603831 56 1e-08
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 54 4e-08
06_03_0810 - 24817268-24817350,24817547-24817697,24818441-248185... 30 0.75
05_04_0423 - 21126038-21126556 28 2.3
03_05_0287 + 22759946-22760836 28 2.3
06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066 27 5.3
03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534... 27 5.3
02_05_0018 - 25011623-25013764 27 5.3
03_02_0846 + 11712530-11712740,11713974-11714055,11714127-117142... 27 7.0
03_02_0738 - 10824121-10825572 27 7.0
01_03_0140 - 12979580-12980158,12980297-12980479,12980721-129809... 27 7.0
03_01_0260 - 1999462-1999488,1999748-1999930,2000940-2001146,200... 26 9.2
>07_03_0571 - 19602755-19603831
Length = 358
Score = 55.6 bits (128), Expect = 1e-08
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 11/90 (12%)
Frame = +1
Query: 148 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVVAL 324
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y + +
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
Query: 325 ED----------DPKQLYVAMTSDRGLCGA 384
ED K V +T +RGLCG+
Sbjct: 97 EDIDLPLTRIRPVKKVALVVLTGERGLCGS 126
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 54.0 bits (124), Expect = 4e-08
Identities = 31/79 (39%), Positives = 48/79 (60%)
Frame = +1
Query: 154 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVVALEDD 333
+A+ R+KSV+NIQKIT++MKMV+A+K + + +R + F V D
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116
Query: 334 PKQLYVAMTSDRGLCGAVH 390
K + VA+TSD+GLCG ++
Sbjct: 117 KKNVIVAITSDKGLCGGIN 135
>06_03_0810 -
24817268-24817350,24817547-24817697,24818441-24818542,
24818722-24818802,24818900-24819020,24819284-24819401,
24819514-24819637,24819898-24819963,24820117-24820407,
24820455-24820592,24820967-24821116,24821240-24821410,
24821543-24821746,24821880-24822104,24822461-24822595,
24822995-24823096,24823586-24823882,24823979-24824167,
24824581-24824628,24824872-24825070,24825501-24825730,
24826373-24826568,24826695-24826882
Length = 1202
Score = 29.9 bits (64), Expect = 0.75
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 108 GGGGQPPAEQEYGHT*SHLHSSQVCKEYSED 200
G G + A ++ HT H+HS KEY ED
Sbjct: 246 GTGARSNAYTDFHHTVFHIHSPTKTKEYGED 276
>05_04_0423 - 21126038-21126556
Length = 172
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 66 ENVESCRTGCMHPSGGGGQPPAE 134
E + CRT CM +G QPPA+
Sbjct: 105 EKLHQCRTPCMKVNGRWEQPPAD 127
>03_05_0287 + 22759946-22760836
Length = 296
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 241 RAERDLKAARPYGEGAVQFYERAEVVALEDDPKQLYVAMTSDRGL 375
R+ DLK P+ G + ERA + +++DP ++V D G+
Sbjct: 223 RSVIDLKPVLPWPIGKPKGKERACLAVVDEDPDVIFVGTEEDDGV 267
>06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066
Length = 489
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 223 SAAKYT-RAERDLKAARPYGEGAVQFYERAEVVALEDDPKQLYVAMTSD 366
+AA++ R DL+ P+ G + ERA + A+ +DP ++V D
Sbjct: 319 AAARWVWRVAIDLEQVLPWPVGNTKGKERACLAAVAEDPNVIFVGTEED 367
>03_02_0061 +
5342338-5342401,5343025-5343131,5343962-5344009,
5344297-5344399,5345152-5345234,5345271-5346089,
5346189-5346338,5346420-5346797
Length = 583
Score = 27.1 bits (57), Expect = 5.3
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +1
Query: 64 VKMLSRVAPGVCTQAVAVVNHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTR 243
++ LS + C A+ N N L A +RL +++Q T S+ SA Y R
Sbjct: 329 LQRLSHLEVFECRMLQAIENKAPNLCSFDLGARQVRLLLGESLQMKTLSLDYPSAVYYAR 388
Query: 244 AE 249
AE
Sbjct: 389 AE 390
>02_05_0018 - 25011623-25013764
Length = 713
Score = 27.1 bits (57), Expect = 5.3
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +1
Query: 64 VKMLSRVAPGVCTQAVAVVNHQQNRNMATL-KAISIRLKSVKNIQKITQSMKMVSAAKY- 237
V L ++ +AV ++ + + L +AI +R + +N++ +S M A K
Sbjct: 487 VNSLGLISSRKTAEAVEILKLMSSTFLVALCQAIDLR-QIEENVKSAVKSCVMTVARKTL 545
Query: 238 -TRAERDLKAARPYGEGAVQFYERAEVVALEDDP 336
T A L AAR + +Q +R V A DDP
Sbjct: 546 STSATGGLHAARFCEKDLLQEIDREAVFAYADDP 579
>03_02_0846 +
11712530-11712740,11713974-11714055,11714127-11714226,
11714311-11714406,11714492-11714542,11714685-11714750,
11715413-11715514,11716099-11716167,11716251-11716334,
11716531-11716626,11717216-11717268,11718808-11718945,
11719003-11719435
Length = 526
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/51 (19%), Positives = 27/51 (52%)
Frame = +1
Query: 124 HQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPY 276
+ ++ + TL+ S + ++ +QK+++ + + S Y RD+ ++ Y
Sbjct: 231 YNSDKMVGTLQVASTGIVALSYVQKVSEKVSLASDFMYNHMSRDVTSSFGY 281
>03_02_0738 - 10824121-10825572
Length = 483
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 135 VLLVVDHRHRLGAYTRCDTTQHFHGFF 55
V L+V RHR GA + + + HGF+
Sbjct: 338 VFLLVTQRHRWGAKVFLENSYNLHGFW 364
>01_03_0140 -
12979580-12980158,12980297-12980479,12980721-12980914,
12980974-12980998
Length = 326
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = -1
Query: 336 RVILKGDYLS-PFVELNSAFAIWTSGLQ 256
R +L G +S FVEL SA++IWT+GL+
Sbjct: 109 RSLLGGTSISRTFVEL-SAYSIWTTGLR 135
>03_01_0260 -
1999462-1999488,1999748-1999930,2000940-2001146,
2001895-2002359
Length = 293
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -3
Query: 382 HHTVLCQRS*RRRAA*GHPQGRLPQPFRRTEQRLRHMDERPSN 254
H+ VLC S A G ++ + +R T+ RLRH D+RP +
Sbjct: 10 HYEVLCLPSGEEGA--GLSLEQIEKAYR-TQSRLRHPDKRPDD 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,471,023
Number of Sequences: 37544
Number of extensions: 256576
Number of successful extensions: 796
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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