Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F09
         (390 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-5|AAO21417.1|  200|Caenorhabditis elegans Hypothetical ...   111   2e-25
AC084158-4|AAK68562.1|  299|Caenorhabditis elegans Hypothetical ...   111   2e-25
AC084158-3|AAL00872.1|  313|Caenorhabditis elegans Hypothetical ...   111   2e-25
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical...    27   6.2  
AF003150-3|AAB54214.1|  208|Caenorhabditis elegans Collagen prot...    27   6.2  
AC006777-3|AAK72309.1|  345|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AC084158-5|AAO21417.1|  200|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18c protein.
          Length = 200

 Score =  111 bits (267), Expect = 2e-25
 Identities = 58/94 (61%), Positives = 69/94 (73%), Gaps = 4/94 (4%)
 Frame = +1

Query: 121 NHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 300
           N +Q R  ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA  F+
Sbjct: 18  NAEQARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFF 77

Query: 301 ER----AEVVALEDDPKQLYVAMTSDRGLCGAVH 390
           +      E V  ++  KQ+ V +TSDRGLCG VH
Sbjct: 78  DNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVH 111


>AC084158-4|AAK68562.1|  299|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18a protein.
          Length = 299

 Score =  111 bits (267), Expect = 2e-25
 Identities = 58/94 (61%), Positives = 69/94 (73%), Gaps = 4/94 (4%)
 Frame = +1

Query: 121 NHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 300
           N +Q R  ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA  F+
Sbjct: 18  NAEQARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFF 77

Query: 301 ER----AEVVALEDDPKQLYVAMTSDRGLCGAVH 390
           +      E V  ++  KQ+ V +TSDRGLCG VH
Sbjct: 78  DNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVH 111


>AC084158-3|AAL00872.1|  313|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18b protein.
          Length = 313

 Score =  111 bits (267), Expect = 2e-25
 Identities = 58/94 (61%), Positives = 69/94 (73%), Gaps = 4/94 (4%)
 Frame = +1

Query: 121 NHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 300
           N +Q R  ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA  F+
Sbjct: 18  NAEQARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFF 77

Query: 301 ER----AEVVALEDDPKQLYVAMTSDRGLCGAVH 390
           +      E V  ++  KQ+ V +TSDRGLCG VH
Sbjct: 78  DNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVH 111


>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical
           protein W04A8.7 protein.
          Length = 1792

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 42  LKTPEKSRENVESCRTGCMHPSGGGGQPPAEQEYGHT*SHLHSSQVCKEYSEDHPV 209
           ++TP K ++ V + R   M  + GGG+    ++     S    + V  EYSE+HPV
Sbjct: 560 IQTPVKHQQRVAAMRE-AMRQAQGGGEVFYMRDVQDL-SGKDETLVMIEYSEEHPV 613


>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
           protein W04A8.7 protein.
          Length = 1792

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 42  LKTPEKSRENVESCRTGCMHPSGGGGQPPAEQEYGHT*SHLHSSQVCKEYSEDHPV 209
           ++TP K ++ V + R   M  + GGG+    ++     S    + V  EYSE+HPV
Sbjct: 560 IQTPVKHQQRVAAMRE-AMRQAQGGGEVFYMRDVQDL-SGKDETLVMIEYSEEHPV 613


>AF003150-3|AAB54214.1|  208|Caenorhabditis elegans Collagen protein
           55 protein.
          Length = 208

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 69  NVESCRTGC-MHPSGGGGQPPAEQEYGH 149
           N ES   GC   P G  GQP A+ E GH
Sbjct: 94  NCESQSQGCPAGPPGPPGQPGAQGEQGH 121


>AC006777-3|AAK72309.1|  345|Caenorhabditis elegans Hypothetical
           protein Y46H3D.6 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 147 GHIPVLLVVDHRHRLGAYTRCDTTQHFHGFFQA 49
           GHIP ++     H++ ++     +QHF   FQ+
Sbjct: 120 GHIPKMIKYQEMHKMCSFDLQLVSQHFTSIFQS 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,105,714
Number of Sequences: 27780
Number of extensions: 190936
Number of successful extensions: 585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)