Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F08
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   0.72 
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    27   0.95 
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   1.7  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   2.9  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    25   3.8  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    24   6.7  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    23   8.8  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    23   8.8  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 185  MLPTDLEPALSFCTHLLYKSAGIQADTYKMVSVNENLD 298
            M+ +D EP +S C  LL  +     D + MVS  E  +
Sbjct: 1281 MVESDYEPDVSLCPELLSLAIDFPGDPFVMVSKMEKYE 1318


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 0.95
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 162 ISENLKHVCCLRTWSLL-FRSAPICCT--NLPASKLTHIKWFQSMRIWT 299
           IS  +KH   L + S    ++ P+ CT  +LP+   T + W   M  +T
Sbjct: 168 ISPGMKHYLLLLSVSFYGIQNDPLLCTRTHLPSKYFTSVSWMTQMFYYT 216


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 319 ISLRPINVQILID*NHFICVS 257
           I  RPI   + ID  HFIC S
Sbjct: 197 IHARPIQTSVRIDTTHFICSS 217


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 214  KSRLQVRRQHTCLRFSDIALAVIVAEDF 131
            K RLQ R  +   +FS + LAV+ A+ F
Sbjct: 1055 KKRLQKRLGYNDTQFSKVKLAVLQAQSF 1082


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 126 KAKSSATMTARAISENLKHVCCLRTWS 206
           K K+S     R   EN+ H+CC  T S
Sbjct: 45  KDKNSTLKIDRLFEENVPHLCCQVTAS 71


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 110 ASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALS 217
           A+P+S+ +VL Y  S+++   S    LP+   P+++
Sbjct: 556 ATPASRERVLPYTRSQAFHSTSLPPSLPSGHSPSIA 591


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 98   TNHPASPSSQSKVLCYYDSKSYIRESQARML 190
            TN+   PSS   ++   DS  + +ES+ + L
Sbjct: 1063 TNNTLEPSSVEAIVSSKDSDKHAKESKGKSL 1093


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 235 QQMGAERKSRLQVRRQHTCLRF 170
           +++ + R+ RLQ  R H CL F
Sbjct: 127 RELNSHREKRLQDTRVHCCLFF 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,221,829
Number of Sequences: 5004
Number of extensions: 19832
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)