Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F08
         (327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0517 + 9054816-9055655                                           29   0.65 
01_05_0197 + 19143582-19143618,19143814-19144523                       27   3.5  
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335...    27   4.6  
02_05_1001 + 33423562-33424098                                         27   4.6  
01_06_0630 - 30723903-30724496                                         27   4.6  
07_01_0501 - 3745447-3746244                                           26   6.1  
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262...    26   8.0  
11_01_0259 + 1981554-1982249                                           26   8.0  
04_04_0236 + 23825368-23825763,23826229-23828667                       26   8.0  
01_06_1034 + 33962813-33963802                                         26   8.0  

>03_02_0517 + 9054816-9055655
          Length = 279

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 168 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFQSMRIWTL 302
           +++ H  C+  W  L  S P+C   LPA+     +    + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198


>01_05_0197 + 19143582-19143618,19143814-19144523
          Length = 248

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = +2

Query: 134 VLCYYDSKSYIRES-------QARMLPTDLEPALSFCTHLLYKSAGIQADTYKM 274
           +  +YD KS IR+        + ++   D+E +  F  HL+ +S G+  D +K+
Sbjct: 132 ITSHYDGKSGIRKHILEMTHMENQLRSMDMEISDGFLVHLIMRSLGLNYDPFKI 185


>05_01_0425 -
           3347604-3347708,3348394-3348466,3349917-3350581,
           3350609-3351088,3351253-3351534
          Length = 534

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
 Frame = +3

Query: 51  RPWSPSPGYW------R*RLRLPTTQHHLVAKAKSSA 143
           R WSPS G W        R RLPTT+ H   +    A
Sbjct: 433 RAWSPSVGDWLADRPRTLRFRLPTTKDHTTERISGLA 469


>02_05_1001 + 33423562-33424098
          Length = 178

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 255 WMPADLYSRWVQNERA 208
           W PAD+ + WV  ERA
Sbjct: 101 WAPADVVAAWVSRERA 116


>01_06_0630 - 30723903-30724496
          Length = 197

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 180 HVCCLRTWSLLFRSAPIC 233
           HVCCL  W     S P+C
Sbjct: 146 HVCCLDAWLRRNASCPVC 163


>07_01_0501 - 3745447-3746244
          Length = 265

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +2

Query: 170 ESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSVNENLDIDRAQA 316
           E+  R L    E A     H+L  +AG+  D Y  +S     D DR  A
Sbjct: 83  ETGVRALFDAAESAFGAGAHILVANAGLLDDRYPHLSNTPTADFDRTIA 131


>11_06_0120 -
           20324794-20325204,20325416-20325545,20326172-20326255,
           20326584-20326823,20327418-20327498,20327761-20328113
          Length = 432

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 275 PFYMCQLGCRQICTADGCRTKEQAPSP*AAYVLEI-L*YSSCCH 147
           P ++C + CR IC    CRTK+      AAY   + L Y S  H
Sbjct: 265 PDWICPV-CRGICNCSICRTKKGWFPTGAAYRKVVSLGYKSVAH 307


>11_01_0259 + 1981554-1982249
          Length = 231

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 180 HVCCLRTWSLLFRSAPICCTNLPA 251
           H  C+ +W L+ R  P+C   LPA
Sbjct: 169 HEQCIFSWLLINRHCPLCRFPLPA 192


>04_04_0236 + 23825368-23825763,23826229-23828667
          Length = 944

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 101 NHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPAL 214
           NHP +P     ++C+ D   + RE +     T L P +
Sbjct: 276 NHPCNPEMVRFMMCFKDLPDWQREHRPFNAKTRLNPKI 313


>01_06_1034 + 33962813-33963802
          Length = 329

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 168 ENLKHVCCLRTWSLLFRSAPICCTNLPAS 254
           ++L H  C+  W +   S P+C   LP+S
Sbjct: 211 KHLYHAECIIPWLVQHNSCPVCRHPLPSS 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,382,283
Number of Sequences: 37544
Number of extensions: 145941
Number of successful extensions: 401
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)