Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F08
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    34   0.021
AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical ...    29   0.79 
AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical ...    29   0.79 
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    27   3.2  
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    26   5.6  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    26   5.6  
Z81527-12|CAB04277.2|  487|Caenorhabditis elegans Hypothetical p...    26   7.4  
Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical pr...    26   7.4  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    26   7.4  
AL110490-9|CAB54453.2|  607|Caenorhabditis elegans Hypothetical ...    26   7.4  
AF039650-1|AAC14022.3|  607|Caenorhabditis elegans acetylcholine...    26   7.4  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    26   7.4  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    26   7.4  

>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 140 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQAD 262
           CY+ + +  R+ +A+ +P D  P L  CTH+L+    + AD
Sbjct: 57  CYFTNWAQYRQGRAKFVPEDYTPGL--CTHILFAFGWMNAD 95


>AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical
           protein Y73F8A.9 protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 263 CQLGCRQICTADGCRTKEQAPSP 195
           CQ  C+Q C    C T+  AP+P
Sbjct: 103 CQSSCQQTCQTSSCYTQIAAPAP 125


>AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical
           protein Y73F8A.8 protein.
          Length = 420

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 263 CQLGCRQICTADGCRTKEQAPSP 195
           CQ  C+Q C    C T+  AP+P
Sbjct: 104 CQSSCQQTCQTSSCYTQIAAPAP 126


>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
           protein C25A8.4 protein.
          Length = 1067

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 176 QARMLPTDLEPALSFCTHLLYKSAGIQADT----YKMVSVNENLDID 304
           + R+ P  L+  ++ CTHL+Y S  I  DT    Y +  V    DID
Sbjct: 37  KTRLSPNLLQN-ITTCTHLVYGSIPIDRDTGYPQYSVSDVESGYDID 82


>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 239 CTADGCRTKEQAPSP*AAYVLEIL*YSSCCHSSRGLCFGY 120
           C+ + C     AP    +Y      YSSCC+S+   C GY
Sbjct: 65  CSCNPCNGGGCAPR--CSYCPNNFGYSSCCNSNNFSCCGY 102


>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 120 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 242
           +AK    AT  A+    +SE L+H   + TW    R+ P+  +N
Sbjct: 56  IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 120 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 242
           +AK    AT  A+    +SE L+H   + TW    R+ P+  +N
Sbjct: 56  IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99


>Z81527-12|CAB04277.2|  487|Caenorhabditis elegans Hypothetical
           protein F35E12.10 protein.
          Length = 487

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +2

Query: 113 SPSSQSKVLCYYDSKSYIRESQARMLPTDL 202
           SP+ + + L  YD+++Y      +++PT++
Sbjct: 306 SPTHKKETLIQYDAQTYTSSQMPQVIPTNM 335


>Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical
           protein F17C8.3 protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 101 NHPASPSSQSKVLCYYDSKSYIRESQARMLPTDL 202
           N+PA P + +  L YY   S I+ES+ + +   L
Sbjct: 681 NNPAKPGAVTGQLTYYSFLSSIKESRYKPIGVQL 714


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
           2 protein.
          Length = 1668

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 66  SPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKH 182
           S G+W   + LP  Q HLVA    S T+ + A  +N  H
Sbjct: 286 SSGFWALPMFLPNLQKHLVA-IPVSLTLISLAWWQNFVH 323


>AL110490-9|CAB54453.2|  607|Caenorhabditis elegans Hypothetical
           protein Y48B6A.8 protein.
          Length = 607

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 285 LTETILYVSAWMPADLYS 232
           ++E  LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133


>AF039650-1|AAC14022.3|  607|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 607

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 285 LTETILYVSAWMPADLYS 232
           ++E  LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
           protein 2 protein.
          Length = 1668

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 66  SPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKH 182
           S G+W   + LP  Q HLVA    S T+ + A  +N  H
Sbjct: 286 SSGFWALPMFLPNLQKHLVA-IPVSLTLISLAWWQNFVH 323


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 54  PWSPSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISEN 173
           P+SP P + R  LR P T    V   KS++  +  + +EN
Sbjct: 18  PFSPIPKFSR--LRTPRTSREYVCPLKSTSPQSPSSSTEN 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,765,347
Number of Sequences: 27780
Number of extensions: 114709
Number of successful extensions: 347
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)