Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F06
         (221 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0162 + 6054823-6055830                                           26   3.6  
11_03_0174 - 11235667-11235855,11236557-11236652,11236981-11237145     25   6.2  
07_01_0680 + 5128023-5128212,5128629-5128667,5129496-5129637,512...    25   6.2  
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954...    25   6.2  
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353...    25   6.2  

>10_02_0162 + 6054823-6055830
          Length = 335

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 165 AKRLSLTLGAELPPCSSIVKLCYIFIQELV 76
           AK   + L A+ P  + + KLC +F+QEL+
Sbjct: 64  AKEGGMMLSADTP--AFVTKLCELFVQELI 91


>11_03_0174 - 11235667-11235855,11236557-11236652,11236981-11237145
          Length = 149

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 165 AKRLSLTLGAELPPCSSIVKLCYIFIQELVNIRKLY 58
           AK L   L A+LP  S  +  CY  + EL+   + Y
Sbjct: 12  AKNLLERLNAKLPSASMSLTDCYSIVMELIEHPQKY 47


>07_01_0680 +
           5128023-5128212,5128629-5128667,5129496-5129637,
           5129727-5129847,5129951-5130013,5130114-5130203,
           5130572-5130619,5131114-5131260
          Length = 279

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 158 RLAQTQAKVDEVVGIMRVNVE 220
           +LA+ +A+V EV G+M  N+E
Sbjct: 143 KLAKVKAQVSEVKGVMMENIE 163


>03_06_0347 +
           33293915-33294104,33295143-33295284,33295365-33295485,
           33295590-33295652,33296524-33296553,33297411-33297905
          Length = 346

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 158 RLAQTQAKVDEVVGIMRVNVE 220
           +LA+ +A+V EV G+M  N+E
Sbjct: 130 KLAKVKAQVSEVKGVMMENIE 150


>03_01_0459 +
           3533718-3533916,3535009-3535150,3535290-3535410,
           3535513-3535575,3535677-3535823
          Length = 223

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 140 PRVSDKRLAQTQAKVDEVVGIMRVNVE 220
           P   DK LA+ +A+V EV G+M  N+E
Sbjct: 128 PEEIDK-LAKVKAQVTEVKGVMMQNIE 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,245,176
Number of Sequences: 37544
Number of extensions: 56129
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)