Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F06
         (221 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin...    51   1e-07
AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.      51   1e-07
AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.      51   1e-07
Z74472-1|CAA98946.2|  118|Caenorhabditis elegans Hypothetical pr...    28   0.78 
AF239889-1|AAF45301.1|  118|Caenorhabditis elegans synaptobrevin...    28   0.78 

>AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin
           related protein 1 protein.
          Length = 109

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 26/34 (76%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
 Frame = +2

Query: 122 QGGSSA-PRVSDKRLAQTQAKVDEVVGIMRVNVE 220
           QGGS   PR S+KRL QTQA+VDEVVGIM+VNVE
Sbjct: 10  QGGSQGGPRPSNKRLQQTQAQVDEVVGIMKVNVE 43


>AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 26/34 (76%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
 Frame = +2

Query: 122 QGGSSA-PRVSDKRLAQTQAKVDEVVGIMRVNVE 220
           QGGS   PR S+KRL QTQA+VDEVVGIM+VNVE
Sbjct: 10  QGGSQGGPRPSNKRLQQTQAQVDEVVGIMKVNVE 43


>AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 26/34 (76%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
 Frame = +2

Query: 122 QGGSSA-PRVSDKRLAQTQAKVDEVVGIMRVNVE 220
           QGGS   PR S+KRL QTQA+VDEVVGIM+VNVE
Sbjct: 10  QGGSQGGPRPSNKRLQQTQAQVDEVVGIMKVNVE 43


>Z74472-1|CAA98946.2|  118|Caenorhabditis elegans Hypothetical
           protein F23H12.1 protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 104 NLTMEEQGGSSAPRV---SDKRLAQTQAKVDEVVGIMRVNV 217
           N  +E   G + P     + KR+   QA+V+EV+ +MR NV
Sbjct: 12  NKDLEAGNGEAQPPTGTYNTKRMQMAQAQVNEVIDVMRNNV 52


>AF239889-1|AAF45301.1|  118|Caenorhabditis elegans
           synaptobrevin-like protein protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 104 NLTMEEQGGSSAPRV---SDKRLAQTQAKVDEVVGIMRVNV 217
           N  +E   G + P     + KR+   QA+V+EV+ +MR NV
Sbjct: 12  NKDLEAGNGEAQPPTGTYNTKRMQMAQAQVNEVIDVMRNNV 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,979,827
Number of Sequences: 27780
Number of extensions: 58035
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)