Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_F05
(260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 0.31
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 27 0.41
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 0.95
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 2.2
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 2.9
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 24 2.9
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 24 2.9
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 24 3.8
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 24 3.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 3.8
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 23 5.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 23 5.1
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 23 5.1
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 23 5.1
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 23 6.7
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 23 6.7
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 23 6.7
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 23 6.7
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 23 8.8
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 23 8.8
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 23 8.8
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 23 8.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 23 8.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 23 8.8
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 27.5 bits (58), Expect = 0.31
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 82 WRFRNPRPFIRT 47
W F+NP+PF+RT
Sbjct: 344 WEFKNPQPFLRT 355
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 0.41
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 65 RIPEPPAPISGH-GNLLSSVAPPSQLPNFITAVSPTPAN 178
+IP PP P+ N SS +PP+ NF+ + P PAN
Sbjct: 354 QIP-PPKPMQKFPANAASSESPPNATGNFLPS-GPVPAN 390
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 0.95
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 104 NLLSSVAPPSQLPNFITAVSPTPANLQNHFAFHKIC 211
NLLS + P ++LP+ ++S A+ Q+ ++ C
Sbjct: 729 NLLSKIPPGTKLPHMKKSISKLLADHQSQVQLYQSC 764
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 1.3
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = +2
Query: 65 RIPEPP---APISGHGNLLSSVAPPS-QLPNFITAVSP 166
++P PP AP++ + SS APP+ PN +T+ SP
Sbjct: 200 KVPPPPLSQAPVANTSSRPSSFAPPAGHAPN-VTSESP 236
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 2.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 71 PEPPAPISGHGNLLSSVAPPSQLPN 145
P PPAP+S + +V PS +P+
Sbjct: 1476 PAPPAPVSQLPPAVPNVPVPSMIPS 1500
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +2
Query: 5 IRHEGSEI*SIINMSSDKRTRIPEPPAPISGHGNLLSSVAPPSQLP 142
+ + GS + +N + +P P+ S H N + + PP+ P
Sbjct: 1595 VNNSGSPL--AMNAAGQPSLAVPAVPSAPSNHFNPFAKMQPPAPSP 1638
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 2.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +2
Query: 47 SSDKR---TRIPEPPAPISGHGNLLSSVAPPS 133
S+DK+ T PP + G NL SSV P+
Sbjct: 132 SADKQVENTSTSNPPVSVEGSENLASSVGGPT 163
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 24.2 bits (50), Expect = 2.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 125 PPSQLPNFITAVSPTPANLQN 187
PPSQL N+ ++S LQN
Sbjct: 185 PPSQLKNYKDSISTVHIGLQN 205
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 24.2 bits (50), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 68 IPEPPAPISGHGNLLSSVAPP 130
+ E P P+SG+GN+ APP
Sbjct: 398 LSETPTPVSGNGNVAD--APP 416
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 23.8 bits (49), Expect = 3.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 89 ISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHFAFHKI 208
ISGH L SVA LP F T+ + N ++ +
Sbjct: 286 ISGHTGRLWSVAAHPMLPLFATSSQDKSVRIYNSNTYNLV 325
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 23.8 bits (49), Expect = 3.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 135 SFPTSLLLFRLLQRIYRITLPSTRFACY 218
SFP L+ LQR + I ST AC+
Sbjct: 209 SFPFHLIRPEYLQRFFLIKSISTYIACF 236
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.8 bits (49), Expect = 3.8
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 32 SIINMSSDKRTRIPEPPAPISGHGNLLSSVAPPSQLP 142
S + ++ + I +P AP++ + + S+V PP P
Sbjct: 1065 STVTSAASSPSNISKPSAPVANNVSKPSAVPPPPPPP 1101
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 23.4 bits (48), Expect = 5.1
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +2
Query: 71 PEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPA 175
P PP P + SS APP Q TA P A
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQ--TAYPPQQA 238
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 92 SGHGNLLSSVAPPSQLPNFITAVSPT 169
SG+G++ SV P+ P + V+PT
Sbjct: 592 SGNGDVSGSVTTPTSTPLSNSTVAPT 617
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 23.4 bits (48), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 68 IPEPPAPISGHGNLLSSVAPPSQLPN 145
+P+ P P +G N SVAPP+ L N
Sbjct: 260 VPQMPYPQNGMYN--PSVAPPASLVN 283
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 88 RCWRFRNPRPFIRTHVNYTLYFTSLVPN 5
R W R+ R +R ++N++ FT + N
Sbjct: 779 RSWVSRDSRSAVRNYINFSNCFTYWIIN 806
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 23.0 bits (47), Expect = 6.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 62 TRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPT 169
T+ P AP GH L+ +P I V PT
Sbjct: 376 TKAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPT 411
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 23.0 bits (47), Expect = 6.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1
Query: 61 DEDS*TSSTYFWSWQPA 111
D D+ Y+WSW P+
Sbjct: 172 DYDAIAHRGYYWSWSPS 188
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 121 STTVAASQLHYCCFAYSSESTESLCLPQDLPATLHP 228
+ T + +++H CF SS + ++ L + ++HP
Sbjct: 236 TVTDSKARVHLECFGSSSSNNKTTVLVEGGEVSVHP 271
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 98 HGNLLSSVAPPSQLPNFITAVSPTPA 175
HG+ SS P + N + A SP P+
Sbjct: 116 HGSANSSTVLPPRTENALHAASPKPS 141
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 62 TRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANL 181
+++P PP P S + S +P + T +S T +N+
Sbjct: 109 SQLPPPPQPQSHPNVTVISASPARAIEQQPTILSSTDSNI 148
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 22.6 bits (46), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 151 YCCFAY--SSESTESLCLPQDLPATLHPVPVQP 243
Y C Y +++S + + L A +HPVPV P
Sbjct: 98 YKCVIYMPNTQSQAKIDTLKFLGAEVHPVPVAP 130
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 22.6 bits (46), Expect = 8.8
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 119 VAPPSQLPNFITAVSPTPANLQNHFAFHKICLLHYTQY 232
V+ PS+ NF+ P N + ++I + HY ++
Sbjct: 238 VSQPSETENFLPTPEPPKIASANAGSSNEISIPHYQRH 275
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 22.6 bits (46), Expect = 8.8
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = +2
Query: 83 APISGHGNLLSSVAPPSQLPNFITAVS 163
AP++G + + P ++P F++ +S
Sbjct: 251 APVTGMAKVTINKLPTPEIPRFLSQIS 277
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 22.6 bits (46), Expect = 8.8
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = +3
Query: 141 PTSLLLFRLLQRIYRITLPSTRFACYI 221
P+ ++ ++R YR+++ T CY+
Sbjct: 131 PSPKMVVDSIRRAYRVSMTGTPGTCYV 157
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -2
Query: 67 PRPFIRTHVNYTLYFTSLVP 8
P+P I TH Y F+S P
Sbjct: 1603 PKPAIATHSRYNASFSSSPP 1622
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -2
Query: 67 PRPFIRTHVNYTLYFTSLVP 8
P+P I TH Y F+S P
Sbjct: 1603 PKPAIATHSRYNASFSSSPP 1622
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,076,159
Number of Sequences: 5004
Number of extensions: 19923
Number of successful extensions: 83
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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