Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_F04
(214 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 73 5e-15
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 37 4e-04
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 36 6e-04
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 33 0.004
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 27 0.45
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces... 26 0.59
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 25 1.0
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 1.4
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 24 2.4
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 24 2.4
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 24 3.1
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 24 3.1
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 23 4.2
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 23 4.2
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 23 4.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 23 4.2
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 23 5.5
SPAC19A8.09 |||ER to Golgi transport protein Yos1|Schizosaccharo... 23 5.5
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 23 5.5
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 23 5.5
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz... 23 5.5
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 23 5.5
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 23 5.5
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 23 5.5
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 23 7.3
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 23 7.3
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 23 7.3
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 23 7.3
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 23 7.3
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 23 7.3
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 23 7.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 7.3
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 22 9.6
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 22 9.6
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 22 9.6
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 22 9.6
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 22 9.6
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 22 9.6
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 22 9.6
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 22 9.6
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 72.9 bits (171), Expect = 5e-15
Identities = 34/51 (66%), Positives = 38/51 (74%)
Frame = +2
Query: 62 MFILDWFTGVLGFLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLVQHVPT 214
MFI++WF L LGL K K+LFLGLDNAGKTTLLHMLK+DRL PT
Sbjct: 1 MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPT 51
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 36.7 bits (81), Expect = 4e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 113 KKSGKLLFLGLDNAGKTTLLHMLKDDRLVQHVPT 214
K+ ++L +GLD AGKTT+L+ LK +V +PT
Sbjct: 15 KREMRILMVGLDAAGKTTILYKLKLGEIVTTIPT 48
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 36.3 bits (80), Expect = 6e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 116 KSGKLLFLGLDNAGKTTLLHMLKDDRLVQHVPT 214
K ++L LGLD AGKTT+L+ LK ++ V +PT
Sbjct: 20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPT 52
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 33.5 bits (73), Expect = 0.004
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 107 LWKKSGKLLFLGLDNAGKTTLLHMLKDDRLVQHVPT 214
L ++ ++L LGLDNAGKTT+L L ++ + + PT
Sbjct: 12 LKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPT 47
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 26.6 bits (56), Expect = 0.45
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = -2
Query: 195 SLSSFNMCSS-----VVLPALSRPRNRSLPDFFQRPRNPRTPVNQSKINILNLEGM 43
SLSS+N C + PAL RN +P QR + N + +ILNL G+
Sbjct: 200 SLSSYNACPASDADDFTTPALEAWRNVYMPPIRQRLNPYFSNYNLTNDDILNLYGI 255
>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 0.59
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 122 GKLLFL-GLDNAGKTTLLHMLKDDRLVQH 205
G+L+ + GLD +GK+T +L D + QH
Sbjct: 7 GRLIVIEGLDRSGKSTQCQLLVDKLISQH 35
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 116 KSGKLLFLGLDNAGKTTLLHMLKDDRLVQ 202
K + L +G + AGK+TLL +L L +
Sbjct: 29 KGSRTLLVGANGAGKSTLLKLLSGKSLAK 57
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 1.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 123 PDFFQRPRNPRTPVNQSKINILNL-EGMRLRLFQ 25
P+ + NPR V +S + ILNL + +L+LF+
Sbjct: 694 PNSLEFKNNPRIKVPRSLLTILNLHDRSQLKLFE 727
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 128 LLFLGLDNAGKTTLLHML 181
++ GL AGKTTL H++
Sbjct: 419 MMLTGLAGAGKTTLAHVI 436
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 135 NRSLPDFFQRPRNPRTPVNQS 73
N LP F P + +PVNQS
Sbjct: 79 NLKLPSFLAPPNDKDSPVNQS 99
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 23.8 bits (49), Expect = 3.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 171 SSVVLPALSRPRNRSLPDFFQRPRNPRTPVNQSKINILNLEGMRLRLFQHILYL 10
+SV P L+ +RSL D F R V S N + + + ++LF ++ L
Sbjct: 452 ASVRKPVLAAALSRSLKDPFVPAREAALKVLLSVQNYFDTKDVAIKLFPSVVPL 505
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 137 LGLDNAGKTTLLHML 181
+GL NAGK+TLL+ L
Sbjct: 242 VGLPNAGKSTLLNCL 256
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 125 KLLFLGLDNAGKTTLLHMLK 184
K+L LG ++GKTT++ ++
Sbjct: 76 KVLLLGAGDSGKTTIMKQMR 95
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 23.4 bits (48), Expect = 4.2
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 86 GVLGFLGLWKKSGKLLFL-GLDNAGKTTLLHML 181
GV GF+ GKL L G AGKTTLL++L
Sbjct: 903 GVQGFV----VPGKLTALMGESGAGKTTLLNVL 931
>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 140
Score = 23.4 bits (48), Expect = 4.2
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +1
Query: 40 SHTFQIQYVYLGLVHWCPWI 99
S T+++ + LG VH+ W+
Sbjct: 53 SDTYELDWYDLGFVHFSKWV 72
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 106 TKESKDTSEPIQDKHIESGRYE 41
TK+ KDTS +Q +E +E
Sbjct: 629 TKQLKDTSSKLQQLQLERANFE 650
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 213 VGTCWTSLSSFNMCSSVVLPAL 148
VG LS+FN CS +++ AL
Sbjct: 152 VGLFILLLSAFNYCSKLIIKAL 173
>SPAC19A8.09 |||ER to Golgi transport protein
Yos1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 81
Score = 23.0 bits (47), Expect = 5.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 92 LGFLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLVQHVP 211
LG +G W +S L F + K+ +LH+++ R V P
Sbjct: 27 LGRIG-WSQSAALGFGDRQDTIKSRILHLIRAIRTVMTFP 65
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 125 KLLFLGLDNAGKTTLL 172
KL+FLG + GKT+L+
Sbjct: 13 KLVFLGEQSVGKTSLI 28
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -1
Query: 82 EPIQDKHIESGRYEITIISTHLVSSLV 2
EP++ K + +G E+T +S + + + V
Sbjct: 604 EPVKRKPVHAGNLEVTSVSDNKLGATV 630
>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 23.0 bits (47), Expect = 5.5
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -2
Query: 138 RNRSLPDFFQRPRNPRTPVNQSKINILNLEGMRLRLFQHILYLPSC 1
+ +SL + + T +KI L GM + LYLP+C
Sbjct: 146 KGKSLAQAYLKLNGKETYTLLTKILSLGAAGMLEHVLLQSLYLPNC 191
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 23.0 bits (47), Expect = 5.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 107 LWKKSGKLLFLGLDNAGKTTLLHML 181
L K KLL LG +GK TLL L
Sbjct: 276 LVKPRTKLLLLGPPKSGKKTLLSRL 300
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 87 PVNQSKINILNLEGMRLR 34
PV + KIN N+ G+R+R
Sbjct: 237 PVTRQKINWENVSGIRMR 254
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 168 SVVLPALSRPRNRSLPDFFQRPRNPRTPVN 79
S PAL+ P S+ D P P +P+N
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFTPFSPIN 286
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 103 KESKDTSEPIQD--KHIESGRYEITIISTHLVSSLV 2
KE++D + HI++ YE+TIIS ++ ++
Sbjct: 298 KENQDFDDQSTQILNHIKTAYYELTIISKQVLCCIL 333
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 22.6 bits (46), Expect = 7.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 86 GVLGFLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDR 193
G LGF G + F+G + GK+TL+ L R
Sbjct: 52 GGLGFDVARTGIGTVGFIGFPSVGKSTLMTQLTGTR 87
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 104 GLWKKSGKLLFLGLDNAGKTTL 169
G K+ ++ +G+ AGKTT+
Sbjct: 858 GSISKNASIILIGMRGAGKTTI 879
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 150 LSRPRNRSLPDFFQR 106
LS PRN +LP+ F R
Sbjct: 167 LSYPRNANLPEAFSR 181
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = +2
Query: 134 FLGLDNAGKTTLLHMLKD 187
F+G+ N GK+++L+ L++
Sbjct: 150 FVGMPNTGKSSILNSLRN 167
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 125 KLLFLGLDNAGKTTLLHML 181
K+ F+G GK+T+L +L
Sbjct: 471 KVAFVGASGCGKSTILRLL 489
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 112 PKTKESKDTSEPIQDKHIESGRYEITIISTHLVSS 8
P +K S+DT++ + +ES T+ THL S
Sbjct: 337 PGSKYSQDTNKERLEVILESDLLNNTVDGTHLEGS 371
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 22.6 bits (46), Expect = 7.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 208 NMLDQSVIFQHVQ*CSLASII*TQEQKF 125
N+LDQ F H++ CSL + Q QKF
Sbjct: 3233 NILDQRPKFLHLEQCSL-YLSEFQHQKF 3259
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +1
Query: 103 WSLEKVRQTSVPGSR*CW 156
W + ++R+T VPG W
Sbjct: 1297 WHILQIRETDVPGILHAW 1314
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2
Query: 159 LPALSRPRNRSLPDFFQRPRNPRTPV 82
L A R++S+P+ + +P TP+
Sbjct: 149 LKAFHASRSKSMPEVVNKISSPTTPI 174
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 95 GFLGLWKKSGKLLFLGLDNAGKTTLL 172
GF L ++ F+G + GK+TLL
Sbjct: 54 GFDVLKSGDARVAFIGFPSVGKSTLL 79
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/27 (25%), Positives = 14/27 (51%)
Frame = +1
Query: 55 IQYVYLGLVHWCPWIPWSLEKVRQTSV 135
+Q + L L+ W+ W + K+ + V
Sbjct: 23 MQIIALSLMSGVQWLAWGIYKINKNRV 49
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 138 RNRSL-PDFFQRPRNPRTPVNQSKINILNLEGMRL 37
+ RSL ++ RP + V+ + +I+N EG++L
Sbjct: 189 QTRSLIMEYISRPNSIILAVSPANFDIVNSEGLKL 223
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 87 PVNQSKINILNLEGMRLRL 31
P+ SKIN+L EG RL
Sbjct: 362 PLIMSKINVLEKEGKLTRL 380
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 141 PRNRSLPDFFQRPRNPRTPVNQSKINILNLEGMRL 37
PR + P F Q+P +P N ++L+ + L
Sbjct: 178 PREGTPPPFAQQPAEQFSPFNSEYESLLDFRALIL 212
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 107 LWKKSGKLLFLGLD 148
L+ KSGKLLF+ D
Sbjct: 240 LFSKSGKLLFIAKD 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,025,584
Number of Sequences: 5004
Number of extensions: 18908
Number of successful extensions: 95
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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