Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_F02
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0601 - 5268520-5271112,5272448-5272950 28 2.4
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 27 4.2
04_03_0160 + 12099120-12099753,12099879-12099958 27 5.6
03_02_0406 + 8182870-8184262,8184376-8184452,8184809-8184920,818... 27 5.6
11_04_0218 + 14983132-14984658,14984762-14984869,14984964-149851... 26 7.4
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 26 7.4
01_05_0168 - 18865821-18866843 26 7.4
06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245 26 9.8
05_07_0095 - 27659944-27660795,27660900-27661172,27661280-276613... 26 9.8
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 26 9.8
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 185 DSPGSPTAPE-IPPEEYSLNENEERAIIE--PRSLEDPKVKEL 304
D+P PT+PE +PPE+ SL++ A E P S E K++
Sbjct: 426 DTPPPPTSPEQMPPEKDSLDDIAPAAASETAPTSTEQTTKKKM 468
>09_04_0088 +
14494711-14494931,14496309-14496399,14496496-14496571,
14496671-14496755,14497381-14497450,14499111-14499316,
14499434-14499508,14501043-14501133,14501400-14501441,
14501661-14501741,14502010-14502089,14502254-14502365
Length = 409
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 143 LCASCDLWCQSCPRKILLCRLS*VNRCP 60
LC +C C+SCP +CR+S N+ P
Sbjct: 371 LCEACSDKCRSCP----ICRVSIENKLP 394
>04_03_0160 + 12099120-12099753,12099879-12099958
Length = 237
Score = 26.6 bits (56), Expect = 5.6
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -1
Query: 342 ANSSLIQSINTCISSFTLGSSRDLGSIIALSSF--SFKLYSSG 220
+ SSL + SS TLG + + GS +A SSF S+K+ S G
Sbjct: 170 STSSLPSPTSATSSSSTLGGTSNPGSPVAPSSFMDSWKICSPG 212
>03_02_0406 +
8182870-8184262,8184376-8184452,8184809-8184920,
8185064-8185071,8185633-8186217
Length = 724
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 211 RSRGTSGGINCKSTLSLNILY 149
++ G S GI C ST SL +LY
Sbjct: 330 KAEGCSTGIQCNSTDSLTVLY 350
>11_04_0218 +
14983132-14984658,14984762-14984869,14984964-14985125,
14985270-14985275
Length = 600
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +2
Query: 146 EVQDVQAEGRFAIDSPGSPTAPEIPPEEYSLNENEERAIIEPRSLEDPKVKELIQVLIDW 325
+ + + A+D+P P A EIP E ++ + L D + K ++ + DW
Sbjct: 277 DAAEAECRRALAVDNPDDPAAHEIPLGSAIGEEYDDMVSSLRKQLCDLQKKLVLLAVHDW 336
Query: 326 INDE 337
+ E
Sbjct: 337 ASME 340
>04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 26.2 bits (55), Expect = 7.4
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -1
Query: 234 LYSSGGISGA--VGLPGESIANLPSA*TSCTSFMRFLRPMVPILSQKDSSLSSFL 76
L+ GG GA VG+P E ++ +CT+ FL P + +S+ L
Sbjct: 1369 LFCGGGCRGADEVGIPSEDVSLSEKPPATCTTPFFFLWAAAPAFDDEPVMVSNAL 1423
>01_05_0168 - 18865821-18866843
Length = 340
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = -1
Query: 339 NSSLIQSINTCISSFTLGSSRDLGSIIALSSFSF--KLYSSGGISGAV 202
N ++QS ++C ++ + +SRD ++ + ++F + K + +GG A+
Sbjct: 260 NVMVVQSRDSCTRTYMIPASRDFAALGSRNAFYYLWKQFDAGGSYNAL 307
>06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245
Length = 396
Score = 25.8 bits (54), Expect = 9.8
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 188 SPGSPTAPEIP--PEEYSLNENEERAIIEPRSLEDPKVKELIQVLIDWINDEL 340
+P TAP +P P S E ERA R L PK+ ++ ++D N EL
Sbjct: 27 APAEETAPPLPAPPPPVSAEERVERAWAHWRRLGSPKM--VVAPMVD--NSEL 75
>05_07_0095 -
27659944-27660795,27660900-27661172,27661280-27661354,
27661683-27661837,27661935-27662051,27662148-27662487
Length = 603
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 185 DSPGSPTAPEIPP 223
D PGSP PE+PP
Sbjct: 44 DDPGSPMDPEMPP 56
>04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 233 SLNENEERAIIEPRSLEDPKVKELIQVLIDWINDE 337
S++ E ++ S++D +V+E + V +D+I+DE
Sbjct: 1061 SMDAAGEEVLVVTNSMDD-EVREEVHVTVDYIDDE 1094
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,476,012
Number of Sequences: 37544
Number of extensions: 187018
Number of successful extensions: 588
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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