Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_F02
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arr...    40   7e-04
Z93372-5|CAI70403.1|  104|Caenorhabditis elegans Hypothetical pr...    31   0.23 
AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical...    28   1.6  
AL117202-21|CAB55087.1|  370|Caenorhabditis elegans Hypothetical...    27   2.8  
AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical ...    27   3.8  
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ...    27   3.8  
AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical ...    27   3.8  
AL132902-8|CAC14423.2|  699|Caenorhabditis elegans Hypothetical ...    26   6.6  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    26   8.7  
L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans chrom...    26   8.7  

>AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arrest
           at two-fold protein6 protein.
          Length = 375

 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 22/69 (31%), Positives = 36/69 (52%)
 Frame = +2

Query: 146 EVQDVQAEGRFAIDSPGSPTAPEIPPEEYSLNENEERAIIEPRSLEDPKVKELIQVLIDW 325
           EV +++ EGR A+D    P    +      L E E R  +   +  D K+ +++ +LI W
Sbjct: 53  EVLELELEGREALDQSLVP----VLARNIWLEEGEIRRYLTKETARDQKLAQVVDLLIYW 108

Query: 326 INDELAPHR 352
           +N+ELA  R
Sbjct: 109 LNEELADQR 117


>Z93372-5|CAI70403.1|  104|Caenorhabditis elegans Hypothetical
           protein BE10.5 protein.
          Length = 104

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 18  NKNFEMSSPRPNSPRTPVYL-RKTTKKNLSGTRLAP*VARSA*RKYKMFRLRVDLQLIPP 194
           N++ +  +P+P  P  P+   R+T KK L   + AP   R + +K +  R    +  IP 
Sbjct: 23  NRHDQPLAPQPAQPGAPLTPDRRTEKKQLKSGKSAPMDVRFSKKKSRKVREDDTVSNIPE 82

Query: 195 EVPRLL 212
           E+P L+
Sbjct: 83  EMPDLV 88


>AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical
           protein Y105C5A.24 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 161 QAEGRFAIDSPGSPTAPEIPPEEYSLNENEERAIIEPRSLEDPKVKELI 307
           Q  GR  +  P +   P++ P+E +  + +E   + P +L+ PKV+  I
Sbjct: 326 QPGGRSPLPLPKTEITPDVKPKEVAPAKVQETPALLPDTLKVPKVERQI 374


>AL117202-21|CAB55087.1|  370|Caenorhabditis elegans Hypothetical
           protein Y47D3A.27 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +2

Query: 59  KDTCLPKKDDKEESFWDXXXXXXXXXXXXEVQDVQAEG-RFAIDSPGSPTAPEIPPEEYS 235
           K T    K+D+EE  +D            +VQD   +G  +++    +    E   ++ S
Sbjct: 91  KITAFNMKEDEEEGHFDETGNFIFDKKTKDVQDAWLDGIDWSLVKKKAGDQWEGDEDKKS 150

Query: 236 LNENEERAIIEPRSLEDPKVKELIQVLID 322
           L + E     EP ++ D + KE+ + L++
Sbjct: 151 LEDEEP----EPITMSDARKKEIFEQLVN 175


>AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical
           protein C35E7.5b protein.
          Length = 954

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 236 LNENEERAIIEPRSLEDPKVKELIQVLIDWINDE 337
           LN+   +    P   +D K KELI + + W+N E
Sbjct: 162 LNQQISKLAGTPLPYQDRKGKELISLQVTWLNKE 195


>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
           protein C35E7.5a protein.
          Length = 1262

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 236 LNENEERAIIEPRSLEDPKVKELIQVLIDWINDE 337
           LN+   +    P   +D K KELI + + W+N E
Sbjct: 162 LNQQISKLAGTPLPYQDRKGKELISLQVTWLNKE 195


>AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical
           protein C41D11.4 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 252 SSFSFKLYSSGGISGAVGLPGESIANLPSA*TSCTSFMRFLRPMVPILSQKD 97
           SS SF  +S+  +S A  L    + +L    TS        +PMVP+  ++D
Sbjct: 23  SSSSFLSHSTSMVSVAASLKRAGVPSLTRTKTSALPIKMEKKPMVPLRIEQD 74


>AL132902-8|CAC14423.2|  699|Caenorhabditis elegans Hypothetical
           protein Y71A12B.9 protein.
          Length = 699

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 191 GNQLQIYPQPEHLVLPLCASCDLWCQSCPRKILL 90
           G+ L  + +  H V+  C S +L+C SC  ++ L
Sbjct: 79  GHALHHFEETSHPVVIDCISFELYCYSCDDEVSL 112


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
           protein 5, isoforma protein.
          Length = 1544

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 203 TAPEIPPEEYSLNENE-ERAIIEPRSLEDP 289
           TAPEI PE  S  ENE     I P ++E P
Sbjct: 613 TAPEITPERGSSAENELYPTEIAPENVEKP 642


>L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans
           chromodomain proteinprotein 1 protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 18/81 (22%), Positives = 37/81 (45%)
 Frame = +2

Query: 77  KKDDKEESFWDXXXXXXXXXXXXEVQDVQAEGRFAIDSPGSPTAPEIPPEEYSLNENEER 256
           KK+ +EE   +            EV+D++ + +   D        ++  E+    E EE+
Sbjct: 158 KKEVQEEPEEEESVEGEDEEESQEVEDLKEDEKMEEDEKEEEEDVQLESEKNEKEEEEEK 217

Query: 257 AIIEPRSLEDPKVKELIQVLI 319
            + E +  E+ + +E IQ++I
Sbjct: 218 -VEEKKEEEEEEEEEEIQLVI 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,160,102
Number of Sequences: 27780
Number of extensions: 162775
Number of successful extensions: 644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)