Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E24
         (212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    35   0.001
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    34   0.003
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   0.45 
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   1.4  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    25   1.8  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    25   1.8  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    24   3.1  
SPBC27B12.10c |tom7||mitochondrial TOM complex subunit Tom7|Schi...    24   3.1  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    23   4.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    23   7.3  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    22   9.6  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    22   9.6  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    22   9.6  

>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 35.1 bits (77), Expect = 0.001
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 21  KNEHVSTLHVIHHGIMPMSVWFGLKFAPGGHSTFFAL--LNTFVHIVIYFYYMVAAMG 188
           K + ++ LH  HHGI  +  +  L    G  S  + +  LN +VH+++Y YY +AA G
Sbjct: 157 KKKPLAFLHCYHHGITALLCFTQLL---GRTSVQWGVIGLNLYVHVIMYSYYFLAACG 211


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 33.9 bits (74), Expect = 0.003
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 9   VLRKKNEHVSTLHVIHHGIMPMSVWFGLKFAPGGHSTFFALLNTFVHIVIYFYYMVAAMG 188
           VLRKK   +  LH  HHG   + V+  +       S     +N  VH+ +Y+YY + A G
Sbjct: 135 VLRKKP--LQFLHCYHHGATAVLVYTQI-VGRTSISWLIIEINLLVHVTMYYYYYLVAKG 191


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 50  HPSRHNANVRLVRTQIRTRWPQHILRVVK 136
           H  +H A V   R +I+ RWP  ILR  K
Sbjct: 303 HDIQHRARVN--REEIKPRWPMIILRTPK 329


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 140 ICSHCNLFLL-YGSRHGSKVSEI 205
           +CSHCN  LL  GS  GS+  E+
Sbjct: 829 VCSHCNRKLLKSGSDDGSETHEM 851


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 179 GYHIIEIDYNVNKCI*QREECAVATWCEFESEPDGH 72
           G H + ++Y++ K     ++C + + C  E  PDG+
Sbjct: 248 GPHQVGLNYHLAKSY--LDKCGITSLCMIEKGPDGN 281


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 42  LHVIHHGIMPMSVWFGLK 95
           LHV H  ++ ++ WFG+K
Sbjct: 168 LHVGHKVLLTLTAWFGVK 185


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 159 RLQCEQMYLTTRRM 118
           RLQC Q+Y  T+RM
Sbjct: 399 RLQCRQLYEGTKRM 412


>SPBC27B12.10c |tom7||mitochondrial TOM complex subunit
          Tom7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 49

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 48 VIHHGIMPMSVWFGLKF 98
          V H+G +P+ +W G+ F
Sbjct: 21 VTHYGWIPLILWLGMAF 37


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 155 YNVNKCI*QREECAVATWCEFESEPDGHWHYAV 57
           Y V+     RE C V T   F+S P+G   + V
Sbjct: 167 YQVHSFFNDREFCEVETPLLFKSTPEGAREFVV 199


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 206  VFLILWTHGGYHIIEIDYNVNKCI 135
            V+L++W    YH  E  YN+   I
Sbjct: 1323 VYLLVWDLIFYHFEETTYNIKLSI 1346


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 68   ANVRLVRTQIRT--RWPQHILRVVKYICSHC-NLFLL 169
            A + LV   ++T  R+P H  R V  + SHC +LF +
Sbjct: 912  ALISLVFNNLQTINRFPGHRERYVSTLISHCGDLFAI 948


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 125 EECAVATWC 99
           E+CA+A WC
Sbjct: 340 EQCAMAAWC 348


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 126 ALLNTFVHIVIYFY 167
           A+LN + HI++++Y
Sbjct: 357 AILNVYSHILLFYY 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 952,618
Number of Sequences: 5004
Number of extensions: 17012
Number of successful extensions: 39
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)