Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_E24
(212 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0821 - 27960414-27961253 27 2.7
12_02_1013 + 25305531-25305611,25305793-25305861,25306115-253062... 26 3.6
11_02_0040 - 7665220-7666656 26 3.6
05_05_0068 + 22131273-22131465,22131545-22131672,22131766-221318... 26 3.6
05_01_0346 - 2710420-2710683,2711595-2711672,2711861-2711888,271... 26 3.6
02_05_0364 + 28304743-28304814,28305021-28305197,28307309-283074... 26 3.6
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 26 4.8
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 25 6.3
03_01_0194 + 1545144-1545803,1546199-1546234 25 8.3
>03_05_0821 - 27960414-27961253
Length = 279
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 33 VSTLHVIHHGIMPMSVWFGLKFAPGGHSTFFALLNTFVHIVIYFYYMVAAMGPKY 197
++ LHV HH + + L A N VH+ +Y YY+ ++G ++
Sbjct: 146 LTLLHVYHHAAVIAMCYLWLATRQSLMPIALAT-NAAVHVAMYGYYLCCSLGLRW 199
>12_02_1013 +
25305531-25305611,25305793-25305861,25306115-25306208,
25306292-25306396,25306577-25306660,25306793-25306866,
25307936-25308001,25308892-25308948,25309433-25309477,
25309602-25309655,25310097-25310237
Length = 289
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 41 ASCHPSRHNANVRLVRTQIRTRWPQHILRVVKY 139
A PS + +RL+++Q R PQ + VKY
Sbjct: 256 AGFDPSTSSLEIRLIQSQDEIRRPQITCKAVKY 288
>11_02_0040 - 7665220-7666656
Length = 478
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 87 GLKFAPGGHSTFFALLNTFVHIVIYFYYMVAA 182
GL FAP HS+ ALL+T H+V + +AA
Sbjct: 42 GLLFAPP-HSSSTALLSTTAHVVEHLAAALAA 72
>05_05_0068 +
22131273-22131465,22131545-22131672,22131766-22131884,
22133304-22133379
Length = 171
Score = 26.2 bits (55), Expect = 3.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 12 LRKKNEHVSTLHVIHHG 62
L ++ +H+ LHV+HHG
Sbjct: 34 LLRRGDHLVVLHVLHHG 50
>05_01_0346 -
2710420-2710683,2711595-2711672,2711861-2711888,
2711973-2712022,2712112-2712165,2712240-2712281,
2712583-2712646,2713831-2713851,2714310-2714479,
2714746-2714910
Length = 311
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 9 VLRKKNEHVSTLHVIHHGIMPMSVWFGLKFAPGGHSTFFALLNTFVHIVI 158
+L KKN++ T H +HH + +S G K F + N+FV ++I
Sbjct: 229 ILLKKNKN--TGHHLHHFHLKLSCQLGKKLEMEHCQVRFLIKNSFVKMLI 276
>02_05_0364 +
28304743-28304814,28305021-28305197,28307309-28307431,
28307644-28308043,28308129-28308242,28308359-28308454,
28308598-28308791
Length = 391
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 68 ANVRLVRTQIRTRWPQHILRVVKYICSHCNLFLLYGSRHGSKVSEIHL 211
+N + VR IRT + +R+V C H + L G H + S+ ++
Sbjct: 282 SNQKDVRLPIRTPDGKIHIRMVSVHCKHDKIILNLGKEHSLRTSKEYI 329
>02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 63 IMPMSVWFGLKFAPGGHSTFFALLNTFVHIVIYFYYMVAAMGPKYQKYIW 212
+M W G K PG TF +N+ V I + A G + K +W
Sbjct: 1614 VMDADSWIGCKGCPGHAMTF---INSLVKIDRFLEDENLASGDNFVKRVW 1660
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -1
Query: 170 IIEIDYNVNKCI*QREECAVATWCEFESEPDGHWH 66
+I I N+C +RE + C+ + +PD W+
Sbjct: 342 VIWIKPLTNECYMKREPGTLPNMCDRDDDPDAAWN 376
>03_01_0194 + 1545144-1545803,1546199-1546234
Length = 231
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -3
Query: 189 DPWRLPYNRNRLQCEQMYLTTRRMCCG 109
+PW P ++ E++ + +R++CCG
Sbjct: 179 NPWSPP--KSTFTLEELMMLSRKLCCG 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,357,591
Number of Sequences: 37544
Number of extensions: 112411
Number of successful extensions: 290
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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